Non-Coding RNA Search

Ss1.1-rcst36_h12.5

Sequence:


               
               TCGCTGACCGCTGTCCGGCCCTTGAGGAGCTGGACCTCACCGCCTGCCGACAGCTCAAGG
ATGAGGCCATCGTGTACCTGGCGCAGAGGCGCGGCGCAGGCCTCCGCAGCCTCTCGCTGG
CGGTAAACGCCAATGTGGGGGACGCCGCCGTCCAGGAGTTGGCTCGGAACTGCCCAGAAC
TCGAGCACCTCGACCTAACCGGCTGCCTGCGCGTCGGAAGCGACGGTGTCAGGACATTGG
CCGAGTACTGCCCGGCGCTACGCTCGCTGCGGGTGCGGCACTGCCACCATGTGGCCGAGC
CGAGCCTGAGCCGCTTGCGGAAGCGCGGTGTGGACATCGACGTGGAGCCGCCGCTGCATC
AGGCCCTGGTGCTGCTGCAGGACATGGTGGGCTTTGCACCCTTTGTCAACCTGCAGGTCT
GACCCGCCTGCCGATGGGCACAGCTGAACTGTGTGGCAGGGCCTCACTGTGAACTGCAGG
GAAACAACTGTGGGGGCCTCGGGTGAGAGGCCAATGCCCTGCCCCACCCTGGAGCTTCGA
ATAAAGAGCTTTTTACCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCTGACCGCTGTCCGGCCCTTGAGGAGCTGGACCTCACCGCCTGCCGACAGCTCAAGG
ATGAGGCCATCGTGTACCTGGCGCAGAGGCGCGGCGCAGGCCTCCGCAGCCTCTCGCTGG
CGGTAAACGCCAATGTGGGGGACGCCGCCGTCCAGGAGTTGGCTCGGAACTGCCCAGAAC
TCGAGCACCTCGACCTAACCGGCTGCCTGCGCGTCGGAAGCGACGGTGTCAGGACATTGG
CCGAGTACTGCCCGGCGCTACGCTCGCTGCGGGTGCGGCACTGCCACCATGTGGCCGAGC
CGAGCCTGAGCCGCTTGCGGAAGCGCGGTGTGGACATCGACGTGGAGCCGCCGCTGCATC
AGGCCCTGGTGCTGCTGCAGGACATGGTGGGCTTTGCACCCTTTGTCAACCTGCAGGTCT
GACCCGCCTGCCGATGGGCACAGCTGAACTGTGTGGCAGGGCCTCACTGTGAACTGCAGG
GAAACAACTGTGGGGGCCTCGGGTGAGAGGCCAATGCCCTGCCCCACCCTGGAGCTTCGA
ATAAAGAGCTTTTTACCCCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47199028|emb|CAF89277.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47199028|emb|CAF89277.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               429-560, - strand, RNAz p=0.997546

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               429-560, - strand, RNAz p=0.997546

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               230-560, gnl|bosTau2|chr26 (14103573-14103240)
               

               
               230-560, gnl|Hg17|chr10 (104172548-104172883)
               

               
               230-560, gnl|Mm7|chr19 (46226733-46227078)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-560, gnl|bosTau2|chr26 (14103573-14103240)
               

               
               230-560, gnl|Hg17|chr10 (104172548-104172883)
               

               
               230-560, gnl|Mm7|chr19 (46226733-46227078)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.39557)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cag (0.151194)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               cag (0.151194)

	230-560, gnl\|bosTau2\|chr26 (14103573-14103240)
	230-560, gnl\|Hg17\|chr10 (104172548-104172883)
	230-560, gnl\|Mm7\|chr19 (46226733-46227078)

	fcc (0.39557)
	cst (0.280073)
	fce (0.271592)
	fhi (0.169578)
	cje (0.165235)
	cag (0.151194)