Ss1.1-rcst36_l10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCGCCGAACCACACCAAGTTCTCCTGCAAGTTCACCGCAGACATGCTACAAAACTGC TCCGGCCGGCCCGACCCCACCTTCGGCTTCGCGGAGGGAAAGCCGTGTTTCATCATCAAG ATGAACCGGATCGTCAAGTTCCTCCCGGGTAACAGCACAGCCCCCAGGGTGGACTGCGCC TTCCTGGACCAGCCCCGGGACGGCCCACCCCTGCAGGTGGAATACTTCCCTGCCAACGGC ACCTACAGTCTGCACTACTTCCCCTATTACGGCAAGAAAGCCCAGCCCCACTATAGCAAC CCGCTGGTGGCCGCCAAGCTCCTCAACGTCCCCAGGAACAGGGACGTGGTCATCGTGTGC AAGATCCTGGCGGAGCACGTGAGCTTCGACAACCCCCACGACCCCTATGAAGGGAAGGTG GAGTTCAAGCTTAAGATCCAGAAGTAGAATTTGCAGCCGTGACGCCCACGCGGGTCCCTA AGGCAGCAGCGGTCCAACCAACAAGACCCTAAAGGACTCACCTCTTCCATGTGGGCATCA CCCTTCTTGCTGTAACTTATTTTTCTGTCCGTTAATAGAAAGACTAGCAGTGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCGCCGAACCACACCAAGTTCTCCTGCAAGTTCACCGCAGACATGCTACAAAACTGC TCCGGCCGGCCCGACCCCACCTTCGGCTTCGCGGAGGGAAAGCCGTGTTTCATCATCAAG ATGAACCGGATCGTCAAGTTCCTCCCGGGTAACAGCACAGCCCCCAGGGTGGACTGCGCC TTCCTGGACCAGCCCCGGGACGGCCCACCCCTGCAGGTGGAATACTTCCCTGCCAACGGC ACCTACAGTCTGCACTACTTCCCCTATTACGGCAAGAAAGCCCAGCCCCACTATAGCAAC CCGCTGGTGGCCGCCAAGCTCCTCAACGTCCCCAGGAACAGGGACGTGGTCATCGTGTGC AAGATCCTGGCGGAGCACGTGAGCTTCGACAACCCCCACGACCCCTATGAAGGGAAGGTG GAGTTCAAGCTTAAGATCCAGAAGTAGAATTTGCAGCCGTGACGCCCACGCGGGTCCCTA AGGCAGCAGCGGTCCAACCAACAAGACCCTAAAGGACTCACCTCTTCCATGTGGGCATCA CCCTTCTTGCTGTAACTTATTTTTCTGTCCGTTAATAGAAAGACTAGCAGTGAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 317-436, - strand, RNAz p=0.635417 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 317-436, - strand, RNAz p=0.635417 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-129, gnl|bosTau2|chr12 (47736601-47736729) | |
| 1-129, gnl|Hg17|chr13 (113355317-113355189) | |
| 1-129, gnl|Mm7|chr8 (13364014-13363886) | |
| 283-447, gnl|bosTau2|chr12 (47739095-47739259) | |
| 283-447, gnl|canFam2|chr5 (35548992-35548841) | |
| 283-447, gnl|echTel1|scaffold_304899 (452-620) | |
| 283-447, gnl|echTel1|scaffold_304899 (440-615) | |
| 283-447, gnl|galGal2|chr1 (130306815-130306649) | |
| 283-447, gnl|hg17|chr11 (133691855-133692032) | |
| 283-447, gnl|hg17|chr13 (113351688-113351857) | |
| 283-447, gnl|Hg17|chr13 (113351854-113351677) | |
| 283-447, gnl|loxAfr1|scaffold_62901 (2527-2696) | |
| 283-447, gnl|loxAfr1|scaffold_62901 (2512-2691) | |
| 283-447, gnl|mm7|chr8 (13360844-13361013) | |
| 283-447, gnl|mm7|chr8 (13360845-13361008) | |
| 283-447, gnl|Mm7|chr8 (13361016-13360836) | |
| 283-447, gnl|monDom2|scaffold_11 (31518868-31518699) | |
| 283-447, gnl|monDom2|scaffold_11 (31518883-31518704) | |
| 283-447, gnl|panTro1|chr14 (96983896-96984065) | |
| 283-447, gnl|panTro1|chr9 (135928898-135929075) | |
| 283-447, gnl|rheMac2|chr14 (132352150-132352327) | |
| 283-447, gnl|rheMac2|chr17 (93740707-93740876) | |
| 283-447, gnl|rn3|chr16 (81008912-81008743) | |
| 283-447, gnl|rn3|chr16 (81008926-81008748) | |
| 283-447, gnl|xenTro1|scaffold_1119 (107868-108035) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-129, gnl|bosTau2|chr12 (47736601-47736729) | |
| 1-129, gnl|Hg17|chr13 (113355317-113355189) | |
| 1-129, gnl|Mm7|chr8 (13364014-13363886) | |
| 283-447, gnl|bosTau2|chr12 (47739095-47739259) | |
| 283-447, gnl|canFam2|chr5 (35548992-35548841) | |
| 283-447, gnl|echTel1|scaffold_304899 (452-620) | |
| 283-447, gnl|echTel1|scaffold_304899 (440-615) | |
| 283-447, gnl|galGal2|chr1 (130306815-130306649) | |
| 283-447, gnl|hg17|chr11 (133691855-133692032) | |
| 283-447, gnl|hg17|chr13 (113351688-113351857) | |
| 283-447, gnl|Hg17|chr13 (113351854-113351677) | |
| 283-447, gnl|loxAfr1|scaffold_62901 (2527-2696) | |
| 283-447, gnl|loxAfr1|scaffold_62901 (2512-2691) | |
| 283-447, gnl|mm7|chr8 (13360844-13361013) | |
| 283-447, gnl|mm7|chr8 (13360845-13361008) | |
| 283-447, gnl|Mm7|chr8 (13361016-13360836) | |
| 283-447, gnl|monDom2|scaffold_11 (31518868-31518699) | |
| 283-447, gnl|monDom2|scaffold_11 (31518883-31518704) | |
| 283-447, gnl|panTro1|chr14 (96983896-96984065) | |
| 283-447, gnl|panTro1|chr9 (135928898-135929075) | |
| 283-447, gnl|rheMac2|chr14 (132352150-132352327) | |
| 283-447, gnl|rheMac2|chr17 (93740707-93740876) | |
| 283-447, gnl|rn3|chr16 (81008912-81008743) | |
| 283-447, gnl|rn3|chr16 (81008926-81008748) | |
| 283-447, gnl|xenTro1|scaffold_1119 (107868-108035) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (1.5404) | |
| nbm (0.198649) | |
| eli (0.151814) |