Ss1.1-rcst37_g16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAGACCGAACTCTGCAGGTGGAACTAGAAGGGGCCCAGGTGTTACGCAGTCGGCTAGAA GAAGTCCTTGGAAGAAGCCTGGAGCGCTTAAGCAGGCTGGAGACCCTGGCCGCCATTGGA GGTGGGGAACTGGAAAGTGTGCAAATTCGTCACAAGCATGCCTTCTGAGCACTGGCGGGT CAGACTGCAGCCCAGGATGGAGACCCTTGTTTGCACTAACCAGAGAGCCTTGTCTGACTT TGGCAGAACTAAATGGTGACTTACTAACGATAGAACTGGTACAAGTAGCATCACCTACAA AGGGAAACTCACTTTAGTCTGCCTGTATTTCACTGCACATAACTAAGTTGAATGGTGGAG GTTACGAAGTATATTTGCACATTTCAAATCATTCCATTTTAGTTTTCCCAGCCATATTCA TTCTTTTTCCCAGCCCTTCCTTCTTTTCCCTCATCCCTCCTATGGGCCAATAAAGTTTAC TCCTCCCCCAAATTCACAATCCATTTCATATGTTCCATATCATGTCATAAATGCATGCGT GTGTATTATTTTTGCCATTGAGTCAACTCCTGCTCTTTGAAAGTAGTTTGTTTTGTGTTG TTTTTTTGGCCACACCCATGGCAAGTGGAATTCTCTGATTAAGTAGTTCGCAAAAGACTG ATAGTCTTCCTCTTATAGAGATACTTTCCAGTTTTAATGGACTTTGCAGGGAGAAGAGGT CATTTAAGAAAGGAGATGAGAAATATAAGAAGAATCATCTATTTTTCTTAGGCTTCCAAT CTTTAGTGACCCATTCCTGCACAATGCTTTTTGTAACTTTATAGAAGTAAAGAGGTGGGG TAGAGTTACCGTTGTGGCATAATGGAAACAAATCCGACTAGGAACCATGAGGCTGTGGAT TCTATCCCTGGCCTTGCTCAGTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAGACCGAACTCTGCAGGTGGAACTAGAAGGGGCCCAGGTGTTACGCAGTCGGCTAGAA GAAGTCCTTGGAAGAAGCCTGGAGCGCTTAAGCAGGCTGGAGACCCTGGCCGCCATTGGA GGTGGGGAACTGGAAAGTGTGCAAATTCGTCACAAGCATGCCTTCTGAGCACTGGCGGGT CAGACTGCAGCCCAGGATGGAGACCCTTGTTTGCACTAACCAGAGAGCCTTGTCTGACTT TGGCAGAACTAAATGGTGACTTACTAACGATAGAACTGGTACAAGTAGCATCACCTACAA AGGGAAACTCACTTTAGTCTGCCTGTATTTCACTGCACATAACTAAGTTGAATGGTGGAG GTTACGAAGTATATTTGCACATTTCAAATCATTCCATTTTAGTTTTCCCAGCCATATTCA TTCTTTTTCCCAGCCCTTCCTTCTTTTCCCTCATCCCTCCTATGGGCCAATAAAGTTTAC TCCTCCCCCAAATTCACAATCCATTTCATATGTTCCATATCATGTCATAAATGCATGCGT GTGTATTATTTTTGCCATTGAGTCAACTCCTGCTCTTTGAAAGTAGTTTGTTTTGTGTTG TTTTTTTGGCCACACCCATGGCAAGTGGAATTCTCTGATTAAGTAGTTCGCAAAAGACTG ATAGTCTTCCTCTTATAGAGATACTTTCCAGTTTTAATGGACTTTGCAGGGAGAAGAGGT CATTTAAGAAAGGAGATGAGAAATATAAGAAGAATCATCTATTTTTCTTAGGCTTCCAAT CTTTAGTGACCCATTCCTGCACAATGCTTTTTGTAACTTTATAGAAGTAAAGAGGTGGGG TAGAGTTACCGTTGTGGCATAATGGAAACAAATCCGACTAGGAACCATGAGGCTGTGGAT TCTATCCCTGGCCTTGCTCAGTGA |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 1-580, gnl|bosTau2|chr3 (17994376-17993820) | |
| 1-580, gnl|Hg17|chr1 (142392241-142391655) | |
| 1-580, gnl|Mm7|chr3 (97612729-97612164) | |
| 626-833, gnl|bosTau2|chr3 (17989994-17989773) | |
| 626-833, gnl|canFam2|chr17 (60382173-60381790) | |
| 626-833, gnl|canFam2|chr17 (60382155-60381841) | |
| 626-833, gnl|canFam2|chr17 (60382155-60381792) | |
| 626-833, gnl|dasNov1|scaffold_133205 (2415-2052) | |
| 626-833, gnl|dasNov1|scaffold_133205 (2415-2054) | |
| 626-833, gnl|dasNov1|scaffold_1531 (37761-38068) | |
| 626-833, gnl|echTel1|scaffold_323307 (148362-147970) | |
| 626-833, gnl|echTel1|scaffold_323307 (148344-148018) | |
| 626-833, gnl|echTel1|scaffold_323307 (148344-147972) | |
| 626-833, gnl|hg17|chr1 (143735908-143736314) | |
| 626-833, gnl|hg17|chr1 (142390276-142390618) | |
| 626-833, gnl|Hg17|chr1 (142390558-142390343) | |
| 626-833, gnl|hg17|chr1_random (581061-581447) | |
| 626-833, gnl|loxAfr1|scaffold_3215 (67196-67594) | |
| 626-833, gnl|loxAfr1|scaffold_3215 (67214-67546) | |
| 626-833, gnl|loxAfr1|scaffold_3215 (67214-67592) | |
| 626-833, gnl|mm7|chr3 (97610647-97611056) | |
| 626-833, gnl|mm7|chr3 (97610665-97611004) | |
| 626-833, gnl|mm7|chr3 (97610665-97611056) | |
| 626-833, gnl|Mm7|chr3 (97610946-97610726) | |
| 626-833, gnl|monDom2|scaffold_44 (863518-863023) | |
| 626-833, gnl|monDom2|scaffold_44 (863379-863071) | |
| 626-833, gnl|monDom2|scaffold_44 (863379-863025) | |
| 626-833, gnl|oryCun1|scaffold_213369 (178911-178515) | |
| 626-833, gnl|oryCun1|scaffold_213369 (178893-178563) | |
| 626-833, gnl|oryCun1|scaffold_213369 (178893-178517) | |
| 626-833, gnl|panTro1|chr1 (113062456-113062049) | |
| 626-833, gnl|panTro1|chr1 (113062438-113062051) | |
| 626-833, gnl|panTro1|chr1_random (18437261-18436917) | |
| 626-833, gnl|rheMac2|chr1 (126450005-126450406) | |
| 626-833, gnl|rheMac2|chr1 (127380857-127380515) | |
| 626-833, gnl|rheMac2|chr1 (123297832-123297446) | |
| 626-833, gnl|rn3|chr2 (192546177-192546584) | |
| 626-833, gnl|rn3|chr2 (192546195-192546536) | |
| 626-833, gnl|rn3|chr2 (192546195-192546582) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-580, gnl|bosTau2|chr3 (17994376-17993820) | |
| 1-580, gnl|Hg17|chr1 (142392241-142391655) | |
| 1-580, gnl|Mm7|chr3 (97612729-97612164) | |
| 626-833, gnl|bosTau2|chr3 (17989994-17989773) | |
| 626-833, gnl|canFam2|chr17 (60382173-60381790) | |
| 626-833, gnl|canFam2|chr17 (60382155-60381841) | |
| 626-833, gnl|canFam2|chr17 (60382155-60381792) | |
| 626-833, gnl|dasNov1|scaffold_133205 (2415-2052) | |
| 626-833, gnl|dasNov1|scaffold_133205 (2415-2054) | |
| 626-833, gnl|dasNov1|scaffold_1531 (37761-38068) | |
| 626-833, gnl|echTel1|scaffold_323307 (148362-147970) | |
| 626-833, gnl|echTel1|scaffold_323307 (148344-148018) | |
| 626-833, gnl|echTel1|scaffold_323307 (148344-147972) | |
| 626-833, gnl|hg17|chr1 (143735908-143736314) | |
| 626-833, gnl|hg17|chr1 (142390276-142390618) | |
| 626-833, gnl|Hg17|chr1 (142390558-142390343) | |
| 626-833, gnl|hg17|chr1_random (581061-581447) | |
| 626-833, gnl|loxAfr1|scaffold_3215 (67196-67594) | |
| 626-833, gnl|loxAfr1|scaffold_3215 (67214-67546) | |
| 626-833, gnl|loxAfr1|scaffold_3215 (67214-67592) | |
| 626-833, gnl|mm7|chr3 (97610647-97611056) | |
| 626-833, gnl|mm7|chr3 (97610665-97611004) | |
| 626-833, gnl|mm7|chr3 (97610665-97611056) | |
| 626-833, gnl|Mm7|chr3 (97610946-97610726) | |
| 626-833, gnl|monDom2|scaffold_44 (863518-863023) | |
| 626-833, gnl|monDom2|scaffold_44 (863379-863071) | |
| 626-833, gnl|monDom2|scaffold_44 (863379-863025) | |
| 626-833, gnl|oryCun1|scaffold_213369 (178911-178515) | |
| 626-833, gnl|oryCun1|scaffold_213369 (178893-178563) | |
| 626-833, gnl|oryCun1|scaffold_213369 (178893-178517) | |
| 626-833, gnl|panTro1|chr1 (113062456-113062049) | |
| 626-833, gnl|panTro1|chr1 (113062438-113062051) | |
| 626-833, gnl|panTro1|chr1_random (18437261-18436917) | |
| 626-833, gnl|rheMac2|chr1 (126450005-126450406) | |
| 626-833, gnl|rheMac2|chr1 (127380857-127380515) | |
| 626-833, gnl|rheMac2|chr1 (123297832-123297446) | |
| 626-833, gnl|rn3|chr2 (192546177-192546584) | |
| 626-833, gnl|rn3|chr2 (192546195-192546536) | |
| 626-833, gnl|rn3|chr2 (192546195-192546582) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| sto (0.179824) | |
| csk (0.140746) | |
| cst (0.140036) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (0.179824) | |
| csk (0.140746) | |
| cst (0.140036) | |
| jej (0.0989218) |