Non-Coding RNA Search

Ss1.1-rcte02_m22.5

Sequence:


               
               ATAAGTCTTTGTTGCTCTTCCCGAACAGNTCAATCCGGGACGGCTGCCTTTCCCAGNCCC
GAGAAAGCCTGGCCNTCTTCCCCAAGCCCCNCCCTTGGGAGCCGATCACGTGTCAGTGAA
GCCTAGGCTGGCCGGCAGCGCCCCACCCCGGCTGATGCAACCGGCCGGAACCCGAGCTCC
GAGGCGGGNCCACACTTCCCGCCCCATTGGAGCCCACGTTTGTCACTTTAGGGCTGCGCC
GCCTCTCCCTCCCCGCTCAGTAACAACGGCGGTGACGTAACGGACGTGACGCAGACGTGG
AGGGAGGGGCAGGTGTGGCCCGAGGTGGCCCGGGAGCCATTAGTAAATGCGCCACCCGAG
ACGGCGGGCCCGCCCAAGGGCTGACCTCCCACCCGCTCCTTCCGGTCGCGCGCAGAAACC
AACCCAGGGGCCCAGGCCTAGTCGTCCGCGAGCCCGGACATCTTCCCTCCGCCTAAGTTC
ACAAAAGCCCGGAACCCTTAGCCGCTTTTCGGGCCCTGCCTGCGGGCCCGGAGCGCCCCG
CTGCCCTACCCGGGCCTTCCTCCCCCTGGGACCTTTCCAGGACTTACCGAAAGAGTGGAG
GTTCTGGATAGCGGACATACGATACGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAG
GCGGCGGCGGCGGCGGGAGAAGGCGGGCAGGGGGGACGGAGCGTCGGGAAGCGAGGGGGC
------------TNGCTGAGTCCTCGGCGGCGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAAGTCTTTGTTGCTCTTCCCGAACAGNTCAATCCGGGACGGCTGCCTTTCCCAGNCCC
GAGAAAGCCTGGCCNTCTTCCCCAAGCCCCNCCCTTGGGAGCCGATCACGTGTCAGTGAA
GCCTAGGCTGGCCGGCAGCGCCCCACCCCGGCTGATGCAACCGGCCGGAACCCGAGCTCC
GAGGCGGGNCCACACTTCCCGCCCCATTGGAGCCCACGTTTGTCACTTTAGGGCTGCGCC
GCCTCTCCCTCCCCGCTCAGTAACAACGGCGGTGACGTAACGGACGTGACGCAGACGTGG
AGGGAGGGGCAGGTGTGGCCCGAGGTGGCCCGGGAGCCATTAGTAAATGCGCCACCCGAG
ACGGCGGGCCCGCCCAAGGGCTGACCTCCCACCCGCTCCTTCCGGTCGCGCGCAGAAACC
AACCCAGGGGCCCAGGCCTAGTCGTCCGCGAGCCCGGACATCTTCCCTCCGCCTAAGTTC
ACAAAAGCCCGGAACCCTTAGCCGCTTTTCGGGCCCTGCCTGCGGGCCCGGAGCGCCCCG
CTGCCCTACCCGGGCCTTCCTCCCCCTGGGACCTTTCCAGGACTTACCGAAAGAGTGGAG
GTTCTGGATAGCGGACATACGATACGATTCCTTTTCCTCGGTGGAAACGGCCTGCGGAAG
GCGGCGGCGGCGGCGGGAGAAGGCGGGCAGGGGGGACGGAGCGTCGGGAAGCGAGGGGGC
------------TNGCTGAGTCCTCGGCGGCGGCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               6-122, - strand, RNAz p=0.567553

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               6-122, - strand, RNAz p=0.567553

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               116-190, - strand, RNAmicro p=0.985542

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               116-190, - strand, RNAmicro p=0.985542

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005801, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005801, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-721, gnl|bosTau2|chr23 (259520-260224)
               

               
               6-721, gnl|Hg17|chr17 (37099422-37098710)
               

               
               6-721, gnl|Mm7|chr11 (100429679-100429072)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-721, gnl|bosTau2|chr23 (259520-260224)
               

               
               6-721, gnl|Hg17|chr17 (37099422-37098710)
               

               
               6-721, gnl|Mm7|chr11 (100429679-100429072)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	6-721, gnl\|bosTau2\|chr23 (259520-260224)
	6-721, gnl\|Hg17\|chr17 (37099422-37098710)
	6-721, gnl\|Mm7\|chr11 (100429679-100429072)