Non-Coding RNA Search

Ss1.1-rcte05_a20.5

Sequence:


               
               ATGTTGGCCCAAATCAGGTCAAAGTTTTAAAACTAAGTGAAGTAGAAAATAATAGTGCCC
AGCATCAGATCTCTGAAGATTTTGTCATTTTGGCTAACAGGGAGAAGAACAAAAATGAAA
ACTTACCCACTGTTACAGCTTCTGGACGGGTGGTAAAAAAAAGTTTTAACCTTCTGGATG
ATGACCCAGAACAAGAGACTTTCAAAATTGTGGACTATGAAGATGAGTTGGATTTGCTTT
CTGTGGTAGCCGTTACTCAAATAGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTGTA
ATGAATATGGAACTTTACTTAAAAGCATTCCACTCGTGGAATCATGGGATGTGACATATA
GCCATGAAGTCTACTTTGACAGAGACTTGGTATTACACATAGAACAGAAACCCAGCAGGG
TCTTCAGCTGCTATGTTTACCAGATGGTATGTGACCATGGGGATGAAGAAGAAACCACAA
ACAGAAGTTGTAAGAAAGACTGCGGTAATTTTAAATTTTGAGATGTAACTTATGAGACTT
CTAGCCACACACCCCAGCAGCCATGTCCAATCCTCCTTTTTATTACCTGCATAACATATT
CCCCAGTATTTTCCAGAAAAAAACCTTGTGTTGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTGGCCCAAATCAGGTCAAAGTTTTAAAACTAAGTGAAGTAGAAAATAATAGTGCCC
AGCATCAGATCTCTGAAGATTTTGTCATTTTGGCTAACAGGGAGAAGAACAAAAATGAAA
ACTTACCCACTGTTACAGCTTCTGGACGGGTGGTAAAAAAAAGTTTTAACCTTCTGGATG
ATGACCCAGAACAAGAGACTTTCAAAATTGTGGACTATGAAGATGAGTTGGATTTGCTTT
CTGTGGTAGCCGTTACTCAAATAGATGCTGAAGGAAAAGCTCACCTGGATTTCCACTGTA
ATGAATATGGAACTTTACTTAAAAGCATTCCACTCGTGGAATCATGGGATGTGACATATA
GCCATGAAGTCTACTTTGACAGAGACTTGGTATTACACATAGAACAGAAACCCAGCAGGG
TCTTCAGCTGCTATGTTTACCAGATGGTATGTGACCATGGGGATGAAGAAGAAACCACAA
ACAGAAGTTGTAAGAAAGACTGCGGTAATTTTAAATTTTGAGATGTAACTTATGAGACTT
CTAGCCACACACCCCAGCAGCCATGTCCAATCCTCCTTTTTATTACCTGCATAACATATT
CCCCAGTATTTTCCAGAAAAAAACCTTGTGTTGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62822180|gb|AAY14729.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62822180|gb|AAY14729.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               353-471, + strand, RNAz p=0.916182

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               353-471, + strand, RNAz p=0.916182

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               353-636, gnl|bosTau2|chr2 (13733697-13733415)
               

               
               353-636, gnl|Hg17|chr2 (172162990-172163254)
               

               
               353-636, gnl|Mm7|chr2 (70933498-70933761)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               353-636, gnl|bosTau2|chr2 (13733697-13733415)
               

               
               353-636, gnl|Hg17|chr2 (172162990-172163254)
               

               
               353-636, gnl|Mm7|chr2 (70933498-70933761)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.29274)
               

               
               tes (0.207814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               tes (0.207814)

	353-636, gnl\|bosTau2\|chr2 (13733697-13733415)
	353-636, gnl\|Hg17\|chr2 (172162990-172163254)
	353-636, gnl\|Mm7\|chr2 (70933498-70933761)