Non-Coding RNA Search

Ss1.1-rcte07_c15.5

Sequence:


               
               TCCACCTTTGCTTCCAGGGCGTCCGTGTCGTCTGAGGGCGGTTGTCCTGAACAAGACGCG
GCACCCACGGAGGCCGTGCTGCACCGTGCTGATTCCGATGCAGGCCTCAGTCGGCTGAGA
CTTGATGGTGAAGACAGCAGAAATTACAGAGAAATAAGTGAAGACTGGTTTGATGCGAAA
GAGAACCTGACCGGAGCTGACTTCACAGGAGAGCAGGAACGTCAGATAGAACAAGACAGC
GGGGACCCGGCGTCTACACAAGAGAGGAAGAGTGTTGCAGCCTTACCAAGAGACGAAGGC
TACTTGGTACATGTTGGTGGTCTCTGCCCCTCCTTGTCTGAGGCTGACCTAAGGTCTCAT
TTCCAGAAATACGAAATTTCTGACATTTCAATTTACGATTCTTCTCCTAATTACAGATAT
GCATCTCTTGCTTTAAAAAAAAAATGATGATGCAAAGATGGCTGTGAAAGAAATGAATGA
TATAGAAATAAATGGAAAATCAGTGAATGTTTGGCTTGTCAAAACTCCTGCGGAATGCGG
AGCACCACTTTCCTCCAAAAATGGAAATAAAGTTAGTTTCAATAATCTGGAGAAAAGCAT
CAGCAAAGAAATCAACTCAGCCTCCTCTCTTTCCAGACTGCCCAGAACTAGGCCAAGGCA
TCTGGGATCTGAGCAAGACAGTGAGTTTTTCCCTTTTGACCAAAAGGGTGTCAAGAAGAA
TTGTAAACAGATTGAATCTGCTAAATTATTACCTGATACACCTATTCAATTCCTACCTCC
AAATACATTGAACCTGCGTAGCCTTACCAAGATCATGAAGAGACTGACTGAACTATATCC
AGAAGTTAGCAGAGACCGTATTATAGACGCTCTGCAGGAAGTAAGACTAAATCATCGCGG
TTTCCTGCACGGCTTATCTATTAGTACTATTGTGGAAATGACTTCTTCTGTTTTGGAAAA
CTCTGCTTCCAAAAGCAGTAAGAGATTAGTTGAATCTACGGATGCAGAACTTGTGGGTAT
GGAGGACATGGAAGATCGCCAAGGCATTCCAGCCGACAGCCAGCTGCCCCTCAACTTGTG
ACAGAATCGGTGTAGATGAGTGGTGCATAGATGCAGGAGTGAGCCCAACCAAGATGAGAC
GTGTCACCCAAATGAGTCTGGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACCTTTGCTTCCAGGGCGTCCGTGTCGTCTGAGGGCGGTTGTCCTGAACAAGACGCG
GCACCCACGGAGGCCGTGCTGCACCGTGCTGATTCCGATGCAGGCCTCAGTCGGCTGAGA
CTTGATGGTGAAGACAGCAGAAATTACAGAGAAATAAGTGAAGACTGGTTTGATGCGAAA
GAGAACCTGACCGGAGCTGACTTCACAGGAGAGCAGGAACGTCAGATAGAACAAGACAGC
GGGGACCCGGCGTCTACACAAGAGAGGAAGAGTGTTGCAGCCTTACCAAGAGACGAAGGC
TACTTGGTACATGTTGGTGGTCTCTGCCCCTCCTTGTCTGAGGCTGACCTAAGGTCTCAT
TTCCAGAAATACGAAATTTCTGACATTTCAATTTACGATTCTTCTCCTAATTACAGATAT
GCATCTCTTGCTTTAAAAAAAAAATGATGATGCAAAGATGGCTGTGAAAGAAATGAATGA
TATAGAAATAAATGGAAAATCAGTGAATGTTTGGCTTGTCAAAACTCCTGCGGAATGCGG
AGCACCACTTTCCTCCAAAAATGGAAATAAAGTTAGTTTCAATAATCTGGAGAAAAGCAT
CAGCAAAGAAATCAACTCAGCCTCCTCTCTTTCCAGACTGCCCAGAACTAGGCCAAGGCA
TCTGGGATCTGAGCAAGACAGTGAGTTTTTCCCTTTTGACCAAAAGGGTGTCAAGAAGAA
TTGTAAACAGATTGAATCTGCTAAATTATTACCTGATACACCTATTCAATTCCTACCTCC
AAATACATTGAACCTGCGTAGCCTTACCAAGATCATGAAGAGACTGACTGAACTATATCC
AGAAGTTAGCAGAGACCGTATTATAGACGCTCTGCAGGAAGTAAGACTAAATCATCGCGG
TTTCCTGCACGGCTTATCTATTAGTACTATTGTGGAAATGACTTCTTCTGTTTTGGAAAA
CTCTGCTTCCAAAAGCAGTAAGAGATTAGTTGAATCTACGGATGCAGAACTTGTGGGTAT
GGAGGACATGGAAGATCGCCAAGGCATTCCAGCCGACAGCCAGCTGCCCCTCAACTTGTG
ACAGAATCGGTGTAGATGAGTGGTGCATAGATGCAGGAGTGAGCCCAACCAAGATGAGAC
GTGTCACCCAAATGAGTCTGGTTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|34527091|dbj|BAC85324.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|34527091|dbj|BAC85324.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               132-259, gnl|bosTau2|chr3 (84301135-84301262)
               

               
               132-259, gnl|Hg17|chr2 (238514932-238515059)
               

               
               132-259, gnl|Mm7|chr1 (91070495-91070622)
               


               
               399-707, gnl|bosTau2|chr3 (84305357-84305662)
               

               
               399-707, gnl|Hg17|chr2 (238519841-238520146)
               

               
               399-707, gnl|Mm7|chr1 (91074225-91074530)
               


               
               851-985, gnl|bosTau2|chr3 (84312117-84312252)
               

               
               851-985, gnl|Hg17|chr2 (238524919-238525054)
               

               
               851-985, gnl|Mm7|chr1 (91076400-91076529)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-259, gnl|bosTau2|chr3 (84301135-84301262)
               

               
               132-259, gnl|Hg17|chr2 (238514932-238515059)
               

               
               132-259, gnl|Mm7|chr1 (91070495-91070622)
               


               
               399-707, gnl|bosTau2|chr3 (84305357-84305662)
               

               
               399-707, gnl|Hg17|chr2 (238519841-238520146)
               

               
               399-707, gnl|Mm7|chr1 (91074225-91074530)
               


               
               851-985, gnl|bosTau2|chr3 (84312117-84312252)
               

               
               851-985, gnl|Hg17|chr2 (238524919-238525054)
               

               
               851-985, gnl|Mm7|chr1 (91076400-91076529)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.58548)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)

	132-259, gnl\|bosTau2\|chr3 (84301135-84301262)
	132-259, gnl\|Hg17\|chr2 (238514932-238515059)
	132-259, gnl\|Mm7\|chr1 (91070495-91070622)

	399-707, gnl\|bosTau2\|chr3 (84305357-84305662)
	399-707, gnl\|Hg17\|chr2 (238519841-238520146)
	399-707, gnl\|Mm7\|chr1 (91074225-91074530)

	851-985, gnl\|bosTau2\|chr3 (84312117-84312252)
	851-985, gnl\|Hg17\|chr2 (238524919-238525054)
	851-985, gnl\|Mm7\|chr1 (91076400-91076529)