Ss1.1-rcte07_o5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAATGTGCTGTTCCCGTGGCAACAAGATAACAAAGACATTTCAAAGGGCATTACTGAAGC TCGTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTGCTTAA ATCTCAGGTCCTTGCTGCAGACTCCACAGTCAGGACCGTGGGCCTCTGGGAGGTGCATAG CGGACTGGTCCTCCTGGCTGCACTGCTCTCACGACCACACAACCTTCCTGTCTTAGTGCT CAGCCTTTTGGTCCAGACCATCATGACTCAGTTCGTCTGGAGGCCCCTGAGGCACAGCAC AGCTGAGGTCACCGTGATGCACTACTGGTTTGGTCAAGCATTCTTCTACTTTCAGGGAAA CTCCAACAGCATCGCCACCGTGGACATCTCAGCGGGCTTCGTGGGCCTGGACGCCTACAT GGAGATCCCAGCCATGTTCCTGACCGCGTTTGCAACATATACCGGGCCTGTCCTGTGGGC CAGCCACCTGGTGAACTTCCTGAGCTCAGAAACCAGCAGCGGATCGTCACTGAGTCATGC CTGCTTCTGCTACGCACTGATTTGTTCTTTTCCAGTTTCTGCATATATCATTTTGGTGAC ATCCTTGCGTTATCATTTATTTATATGGAGTGTGTTTTCTCCAAAACTTCTCTATGAGGG AATGCACCTACTCATTACCGCTGCTATCTGTGTGTTCTTCACAGCCATGGACCAGACCAA CCCAAAGTCTTAGACTGAGCTCTTAGGCACTGAACTCTTGTGTTTTCGTCGTCGATTTGC ATAATGAAAACATCTGTTCAAATGGAAGGTCATTTTTTAAAAGATGTGAATTCTATATGG TTGATGAATAGCTTCAGTTTCTTTGACTGCTGTACTTGAATTTAGGTAGTAAGTAGTTTG AAGAGGTCACTTTAAATACACAGTTTGGATATGAATTGTATTCCCCTGTTGACTGTCACT CCAGAAATTTCTGAACTTTTAATTTTCTCTTGATAAGTTACCCAAATATGTATGTTTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAATGTGCTGTTCCCGTGGCAACAAGATAACAAAGACATTTCAAAGGGCATTACTGAAGC TCGTTTTGTTTATGTCTTTGTCCTTGGCATTCTGTTCACGGGCACCAAAGACTTGCTTAA ATCTCAGGTCCTTGCTGCAGACTCCACAGTCAGGACCGTGGGCCTCTGGGAGGTGCATAG CGGACTGGTCCTCCTGGCTGCACTGCTCTCACGACCACACAACCTTCCTGTCTTAGTGCT CAGCCTTTTGGTCCAGACCATCATGACTCAGTTCGTCTGGAGGCCCCTGAGGCACAGCAC AGCTGAGGTCACCGTGATGCACTACTGGTTTGGTCAAGCATTCTTCTACTTTCAGGGAAA CTCCAACAGCATCGCCACCGTGGACATCTCAGCGGGCTTCGTGGGCCTGGACGCCTACAT GGAGATCCCAGCCATGTTCCTGACCGCGTTTGCAACATATACCGGGCCTGTCCTGTGGGC CAGCCACCTGGTGAACTTCCTGAGCTCAGAAACCAGCAGCGGATCGTCACTGAGTCATGC CTGCTTCTGCTACGCACTGATTTGTTCTTTTCCAGTTTCTGCATATATCATTTTGGTGAC ATCCTTGCGTTATCATTTATTTATATGGAGTGTGTTTTCTCCAAAACTTCTCTATGAGGG AATGCACCTACTCATTACCGCTGCTATCTGTGTGTTCTTCACAGCCATGGACCAGACCAA CCCAAAGTCTTAGACTGAGCTCTTAGGCACTGAACTCTTGTGTTTTCGTCGTCGATTTGC ATAATGAAAACATCTGTTCAAATGGAAGGTCATTTTTTAAAAGATGTGAATTCTATATGG TTGATGAATAGCTTCAGTTTCTTTGACTGCTGTACTTGAATTTAGGTAGTAAGTAGTTTG AAGAGGTCACTTTAAATACACAGTTTGGATATGAATTGTATTCCCCTGTTGACTGTCACT CCAGAAATTTCTGAACTTTTAATTTTCTCTTGATAAGTTACCCAAATATGTATGTTTAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 46-356, gnl|bosTau2|chr6 (63707317-63707627) | |
| 46-356, gnl|canFam2|chr3 (94646403-94646024) | |
| 46-356, gnl|danRer3|chrUn (29871131-29870794) | |
| 46-356, gnl|dasNov1|scaffold_60413 (7306-6924) | |
| 46-356, gnl|echTel1|scaffold_303264 (1822-1469) | |
| 46-356, gnl|fr1|chrUn (168354384-168354715) | |
| 46-356, gnl|galGal2|chrZ (25185791-25185404) | |
| 46-356, gnl|hg17|chr4 (514189-514568) | |
| 46-356, gnl|Hg17|chr4 (514225-514535) | |
| 46-356, gnl|mm7|chr5 (107522681-107523062) | |
| 46-356, gnl|Mm7|chr5 (107522722-107523032) | |
| 46-356, gnl|monDom2|scaffold_10 (50348230-50347857) | |
| 46-356, gnl|oryCun1|scaffold_114064 (12662-13042) | |
| 46-356, gnl|panTro1|chr3 (534204-534583) | |
| 46-356, gnl|rheMac2|chr1 (3440282-3439902) | |
| 46-356, gnl|rn3|chr14 (1960958-1960572) | |
| 46-356, gnl|tetNig1|chr1 (9497887-9498227) | |
| 46-356, gnl|xenTro1|scaffold_868 (481932-482294) | |
| 517-752, gnl|bosTau2|chr6 (63713073-63713309) | |
| 517-752, gnl|Hg17|chr4 (522939-523174) | |
| 517-752, gnl|Mm7|chr5 (107528761-107528994) | |
| 753-1020, gnl|bosTau2|chr6 (63713329-63713607) | |
| 753-1020, gnl|Mm7|chr5 (107529012-107529256) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-356, gnl|bosTau2|chr6 (63707317-63707627) | |
| 46-356, gnl|canFam2|chr3 (94646403-94646024) | |
| 46-356, gnl|danRer3|chrUn (29871131-29870794) | |
| 46-356, gnl|dasNov1|scaffold_60413 (7306-6924) | |
| 46-356, gnl|echTel1|scaffold_303264 (1822-1469) | |
| 46-356, gnl|fr1|chrUn (168354384-168354715) | |
| 46-356, gnl|galGal2|chrZ (25185791-25185404) | |
| 46-356, gnl|hg17|chr4 (514189-514568) | |
| 46-356, gnl|Hg17|chr4 (514225-514535) | |
| 46-356, gnl|mm7|chr5 (107522681-107523062) | |
| 46-356, gnl|Mm7|chr5 (107522722-107523032) | |
| 46-356, gnl|monDom2|scaffold_10 (50348230-50347857) | |
| 46-356, gnl|oryCun1|scaffold_114064 (12662-13042) | |
| 46-356, gnl|panTro1|chr3 (534204-534583) | |
| 46-356, gnl|rheMac2|chr1 (3440282-3439902) | |
| 46-356, gnl|rn3|chr14 (1960958-1960572) | |
| 46-356, gnl|tetNig1|chr1 (9497887-9498227) | |
| 46-356, gnl|xenTro1|scaffold_868 (481932-482294) | |
| 517-752, gnl|bosTau2|chr6 (63713073-63713309) | |
| 517-752, gnl|Hg17|chr4 (522939-523174) | |
| 517-752, gnl|Mm7|chr5 (107528761-107528994) | |
| 753-1020, gnl|bosTau2|chr6 (63713329-63713607) | |
| 753-1020, gnl|Mm7|chr5 (107529012-107529256) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| gul (0.355177) | |
| cte (0.29274) | |
| cmu (0.186393) | |
| eli (0.151814) | |
| isp (0.150376) | |
| kid (0.129735) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eje (0.0988338) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (0.355177) | |
| cte (0.29274) | |
| cmu (0.186393) | |
| eli (0.151814) | |
| isp (0.150376) | |
| kid (0.129735) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eje (0.0988338) |