Non-Coding RNA Search

Ss1.1-rcte09_c24.5

Sequence:


               
               AGAAAATGAACACAGTGATTTTGAACAACCATCTTACGAAGAGAATAGCGTTAATCTGCT
CGATGTGAGAGCTAATTATGAAACAGAGGAGCTACTGAAACACAAAGAGAGAATCACAAC
TTTCAGAGAGTTAATTGCTAATGAAAAATCATTTCAAGATCAGGTTACTGAGGTTACAGA
CGTTGATTCAAGTGAAGCCAAGGATGTCGGAGATGTGCCTGTCTCACTGGGAGCCAAACT
GGATCAGTACCACAGTCTGAACAAAGAGCTCGACTTCTTGATCGAAAAACTGGGAAATCT
CCTTGAGTCCAAAGAAGACTACTGCAACAGACTCACTGAGGAAAATGACAAGTATCAAAG
ACATTTAGGCAACTTAATAAATAAGGTTACATCATATGAAGAAATTATCAAATGTGCTGA
CCAAAGGCTTGTGATATTCCATTCCCAGATTGCACAAACTCATTTCACTTCGAGGAGTGG
AGTAAGGAAGTCGTGAGAAACGTCTGAATATCTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAATGAACACAGTGATTTTGAACAACCATCTTACGAAGAGAATAGCGTTAATCTGCT
CGATGTGAGAGCTAATTATGAAACAGAGGAGCTACTGAAACACAAAGAGAGAATCACAAC
TTTCAGAGAGTTAATTGCTAATGAAAAATCATTTCAAGATCAGGTTACTGAGGTTACAGA
CGTTGATTCAAGTGAAGCCAAGGATGTCGGAGATGTGCCTGTCTCACTGGGAGCCAAACT
GGATCAGTACCACAGTCTGAACAAAGAGCTCGACTTCTTGATCGAAAAACTGGGAAATCT
CCTTGAGTCCAAAGAAGACTACTGCAACAGACTCACTGAGGAAAATGACAAGTATCAAAG
ACATTTAGGCAACTTAATAAATAAGGTTACATCATATGAAGAAATTATCAAATGTGCTGA
CCAAAGGCTTGTGATATTCCATTCCCAGATTGCACAAACTCATTTCACTTCGAGGAGTGG
AGTAAGGAAGTCGTGAGAAACGTCTGAATATCTGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61847836|ref|XP_603498.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61847836|ref|XP_603498.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               280-387, gnl|bosTau2|chr23 (40214662-40214769)
               

               
               280-387, gnl|canFam2|chr35 (10337172-10337625)
               

               
               280-387, gnl|dasNov1|scaffold_151866 (661-1108)
               

               
               280-387, gnl|hg17|chr6 (7301245-7301695)
               

               
               280-387, gnl|Hg17|chr6 (7301362-7301255)
               

               
               280-387, gnl|loxAfr1|scaffold_21380 (29726-30165)
               

               
               280-387, gnl|mm7|chr13 (37431215-37431639)
               

               
               280-387, gnl|Mm7|chr13 (37431322-37431215)
               

               
               280-387, gnl|oryCun1|scaffold_208425 (6891-6466)
               

               
               280-387, gnl|panTro1|chr5 (7682319-7682769)
               

               
               280-387, gnl|rheMac2|chr4 (7266121-7266552)
               

               
               280-387, gnl|rn3|chr17 (33052510-33052095)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-387, gnl|bosTau2|chr23 (40214662-40214769)
               

               
               280-387, gnl|canFam2|chr35 (10337172-10337625)
               

               
               280-387, gnl|dasNov1|scaffold_151866 (661-1108)
               

               
               280-387, gnl|hg17|chr6 (7301245-7301695)
               

               
               280-387, gnl|Hg17|chr6 (7301362-7301255)
               

               
               280-387, gnl|loxAfr1|scaffold_21380 (29726-30165)
               

               
               280-387, gnl|mm7|chr13 (37431215-37431639)
               

               
               280-387, gnl|Mm7|chr13 (37431322-37431215)
               

               
               280-387, gnl|oryCun1|scaffold_208425 (6891-6466)
               

               
               280-387, gnl|panTro1|chr5 (7682319-7682769)
               

               
               280-387, gnl|rheMac2|chr4 (7266121-7266552)
               

               
               280-387, gnl|rn3|chr17 (33052510-33052095)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.29274)
               

               
               thg (0.126791)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               thg (0.126791)

	280-387, gnl\|bosTau2\|chr23 (40214662-40214769)
	280-387, gnl\|canFam2\|chr35 (10337172-10337625)
	280-387, gnl\|dasNov1\|scaffold_151866 (661-1108)
	280-387, gnl\|hg17\|chr6 (7301245-7301695)
	280-387, gnl\|Hg17\|chr6 (7301362-7301255)
	280-387, gnl\|loxAfr1\|scaffold_21380 (29726-30165)
	280-387, gnl\|mm7\|chr13 (37431215-37431639)
	280-387, gnl\|Mm7\|chr13 (37431322-37431215)
	280-387, gnl\|oryCun1\|scaffold_208425 (6891-6466)
	280-387, gnl\|panTro1\|chr5 (7682319-7682769)
	280-387, gnl\|rheMac2\|chr4 (7266121-7266552)
	280-387, gnl\|rn3\|chr17 (33052510-33052095)