Non-Coding RNA Search

Ss1.1-rcte09_j15.5

Sequence:


               
               GTTTCACAGTGGGCAGTATATCAGCGCCAACAAACAACCAACTCAATTTATGCTTCTATT
TAAAATGTTTTAATTTAATTTATTATTTAAAAAAAATATATGTCCATGAACATCAAGTGC
ACTGGCTTGGGTCACTGCATATATCTTGCAACTTCCTGCCATGCATGATAAACTCAGGTT
TAAACACATGCCGTCTGTTTTACTTTATTTTCAATTGTGTAAAACTTTGGCCACACATTC
ATCTCTTTAAATAGTTTTTAATTGAAAAAAACTTCC------------ACTTCTCCATGT
GTGTGTTTTCTTCTTGAGTTTCTTTTTGGAGGATGGAGGAAATAACTCCTGTTCTCTGGG
TCCGTTAGGTGCTGTGACTGAATGAAGTCTAGCACCAACCCACATTGTGGAGATTTGAAA
AAAAAAAGCAAAATATGAAGTGTCAATGGAAGTGAAGAACCACAGCGAGTTGAGCTATCC
TATTCAGGTACTTACTATGCAGCAGACAGGAGTATATTCTCTGAGACCAATATAAACAGT
TGAGAGTCGTCATGAATTCATGCTCTGCAAATGATACTGGTCACAGCCATGGTGATGTCA
GCCCACAAACATTTAACTAGCTCAGTGTCTGACCTATAAGCTTCACCATCACTGACTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCACAGTGGGCAGTATATCAGCGCCAACAAACAACCAACTCAATTTATGCTTCTATT
TAAAATGTTTTAATTTAATTTATTATTTAAAAAAAATATATGTCCATGAACATCAAGTGC
ACTGGCTTGGGTCACTGCATATATCTTGCAACTTCCTGCCATGCATGATAAACTCAGGTT
TAAACACATGCCGTCTGTTTTACTTTATTTTCAATTGTGTAAAACTTTGGCCACACATTC
ATCTCTTTAAATAGTTTTTAATTGAAAAAAACTTCC------------ACTTCTCCATGT
GTGTGTTTTCTTCTTGAGTTTCTTTTTGGAGGATGGAGGAAATAACTCCTGTTCTCTGGG
TCCGTTAGGTGCTGTGACTGAATGAAGTCTAGCACCAACCCACATTGTGGAGATTTGAAA
AAAAAAAGCAAAATATGAAGTGTCAATGGAAGTGAAGAACCACAGCGAGTTGAGCTATCC
TATTCAGGTACTTACTATGCAGCAGACAGGAGTATATTCTCTGAGACCAATATAAACAGT
TGAGAGTCGTCATGAATTCATGCTCTGCAAATGATACTGGTCACAGCCATGGTGATGTCA
GCCCACAAACATTTAACTAGCTCAGTGTCTGACCTATAAGCTTCACCATCACTGACTGTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               118-231, - strand, RNAz p=0.911574
               

               
               310-413, - strand, RNAz p=0.917637

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-231, - strand, RNAz p=0.911574
               

               
               310-413, - strand, RNAz p=0.917637

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               396-464, + strand, RNAmicro p=0.991257
               

               
               393-534, - strand, RNAmicro p=0.9803

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               396-464, + strand, RNAmicro p=0.991257
               

               
               393-534, - strand, RNAmicro p=0.9803

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-646, gnl|bosTau2|chr18 (33595473-33594811)
               

               
               1-646, gnl|Hg17|chr16 (71374735-71375373)
               

               
               1-646, gnl|Mm7|chr8 (107561252-107560547)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-646, gnl|bosTau2|chr18 (33595473-33594811)
               

               
               1-646, gnl|Hg17|chr16 (71374735-71375373)
               

               
               1-646, gnl|Mm7|chr8 (107561252-107560547)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.29274)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	118-231, - strand, RNAz p=0.911574
	310-413, - strand, RNAz p=0.917637

	396-464, + strand, RNAmicro p=0.991257
	393-534, - strand, RNAmicro p=0.9803

	1-646, gnl\|bosTau2\|chr18 (33595473-33594811)
	1-646, gnl\|Hg17\|chr16 (71374735-71375373)
	1-646, gnl\|Mm7\|chr8 (107561252-107560547)