Non-Coding RNA Search

Ss1.1-rcte11_g4.5

Sequence:


               
               GGAAGTGACTAAGGCAAGCTCAGGATTCATAAATTATCCTTAAGTTTATTCAGTGCCTTT
CCTCAATGGAGCTTAAAGCACAGCACATAAATTTTATCTTATTTAGCCCTGGAGCATCAC
TAAGAAGCATCTAGGAACTATGTCTTGCTACACAGGTTATGCTTGTGCCAGAGCAGTTGG
AGAGGTTTGAAATTGCTTCTCAAGTATACCAGGGTCAGGAAAGGCAGAATCTTTGTTCTT
CAGGCTGCTGACCTTTGTATTAACCTTCAACTCTTAGGTTACCCCATTTCTGAATATATT
TATTCCATCATTATTTCTGTAATCACTTAGCATTTGATAGGCTTCTTCCTTGATATTTTT
AACATGATGTTTCAGTTACATATTAAATTATGGAAGAATATGTGATTATTTCATGCAGCA
ATATTCTCATTGCCAGTGGGGGTGCCCACTGAAGAACGGTCTTCTTAGATTATGCATTAT
ATCGAAATGGTCATTGTATTTTCTTCCCCTACTTGTGAAACAATGTGAGCAATCATTTTA
AGGACAATAAAAAAAATGAAGATTTTCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGTGACTAAGGCAAGCTCAGGATTCATAAATTATCCTTAAGTTTATTCAGTGCCTTT
CCTCAATGGAGCTTAAAGCACAGCACATAAATTTTATCTTATTTAGCCCTGGAGCATCAC
TAAGAAGCATCTAGGAACTATGTCTTGCTACACAGGTTATGCTTGTGCCAGAGCAGTTGG
AGAGGTTTGAAATTGCTTCTCAAGTATACCAGGGTCAGGAAAGGCAGAATCTTTGTTCTT
CAGGCTGCTGACCTTTGTATTAACCTTCAACTCTTAGGTTACCCCATTTCTGAATATATT
TATTCCATCATTATTTCTGTAATCACTTAGCATTTGATAGGCTTCTTCCTTGATATTTTT
AACATGATGTTTCAGTTACATATTAAATTATGGAAGAATATGTGATTATTTCATGCAGCA
ATATTCTCATTGCCAGTGGGGGTGCCCACTGAAGAACGGTCTTCTTAGATTATGCATTAT
ATCGAAATGGTCATTGTATTTTCTTCCCCTACTTGTGAAACAATGTGAGCAATCATTTTA
AGGACAATAAAAAAAATGAAGATTTTCAAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-567, gnl|bosTau2|chr20 (6189188-6189759)
               

               
               1-567, gnl|canFam2|chrX (17988967-17989693)
               

               
               1-567, gnl|dasNov1|scaffold_110247 (5944-5253)
               

               
               1-567, gnl|echTel1|scaffold_304209 (9965-10646)
               

               
               1-567, gnl|hg17|chrX (22028406-22029111)
               

               
               1-567, gnl|Hg17|chrX (22028501-22029091)
               

               
               1-567, gnl|loxAfr1|scaffold_3707 (102834-102133)
               

               
               1-567, gnl|monDom2|scaffold_48 (10655406-10654685)
               

               
               1-567, gnl|oryCun1|scaffold_201427 (95998-96707)
               

               
               1-567, gnl|panTro1|chrX (22836361-22837069)
               

               
               1-567, gnl|rheMac2|chrX (20025818-20026513)
               

               
               1-567, gnl|rn3|chrX (59223665-59224370)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-567, gnl|bosTau2|chr20 (6189188-6189759)
               

               
               1-567, gnl|canFam2|chrX (17988967-17989693)
               

               
               1-567, gnl|dasNov1|scaffold_110247 (5944-5253)
               

               
               1-567, gnl|echTel1|scaffold_304209 (9965-10646)
               

               
               1-567, gnl|hg17|chrX (22028406-22029111)
               

               
               1-567, gnl|Hg17|chrX (22028501-22029091)
               

               
               1-567, gnl|loxAfr1|scaffold_3707 (102834-102133)
               

               
               1-567, gnl|monDom2|scaffold_48 (10655406-10654685)
               

               
               1-567, gnl|oryCun1|scaffold_201427 (95998-96707)
               

               
               1-567, gnl|panTro1|chrX (22836361-22837069)
               

               
               1-567, gnl|rheMac2|chrX (20025818-20026513)
               

               
               1-567, gnl|rn3|chrX (59223665-59224370)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cte (0.29274)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               tra (0.123092)
               

               
               jca (0.11396)

	1-567, gnl\|bosTau2\|chr20 (6189188-6189759)
	1-567, gnl\|canFam2\|chrX (17988967-17989693)
	1-567, gnl\|dasNov1\|scaffold_110247 (5944-5253)
	1-567, gnl\|echTel1\|scaffold_304209 (9965-10646)
	1-567, gnl\|hg17\|chrX (22028406-22029111)
	1-567, gnl\|Hg17\|chrX (22028501-22029091)
	1-567, gnl\|loxAfr1\|scaffold_3707 (102834-102133)
	1-567, gnl\|monDom2\|scaffold_48 (10655406-10654685)
	1-567, gnl\|oryCun1\|scaffold_201427 (95998-96707)
	1-567, gnl\|panTro1\|chrX (22836361-22837069)
	1-567, gnl\|rheMac2\|chrX (20025818-20026513)
	1-567, gnl\|rn3\|chrX (59223665-59224370)