Non-Coding RNA Search

Ss1.1-rcte11_h24.5

Sequence:


               
               GGGCGGTCGACCTCTCTCAGGAGTATCCCGCCGCCGCGGGCTCTGTCTCTCAGATCTACC
AGTGGGCACGGCTGCTGAGCGTGCGAAGTCGTTGTTTTTCTAAGTAGCTCTCTTCCAAGC
TCAGTGGTCAGCATGGCCCGTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAG
AAATCGCAGGAAATTACTAAGGGAAAAAGAAAAGAGGATAGCTTGACTACTTCTCAGAGA
AAACAGAGGGACTCTGAGATCATGCAACAAAAGCAGAAGGCAGCCAATGAGAAGAAATCT
ATGCAGACAAGAGAAAAATGATGACTATTTGGAACACTTGGGTGCTACTGCTAACTAGGT
GTATCATAAGCTCCATGATCAAGATTTTGTAGAGTGAACAGTCAGTACATATGTTATATC
CTTATGAAAATATTCTAAACTTTACCTTTCAGCCTTAGTGTGATGTTTCAGAAACATTCT
TCAAAGAATAAAACACTAACCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGGTCGACCTCTCTCAGGAGTATCCCGCCGCCGCGGGCTCTGTCTCTCAGATCTACC
AGTGGGCACGGCTGCTGAGCGTGCGAAGTCGTTGTTTTTCTAAGTAGCTCTCTTCCAAGC
TCAGTGGTCAGCATGGCCCGTGGAAATCAACGAGAACTTGCCCGCCAGAAAAACATGAAG
AAATCGCAGGAAATTACTAAGGGAAAAAGAAAAGAGGATAGCTTGACTACTTCTCAGAGA
AAACAGAGGGACTCTGAGATCATGCAACAAAAGCAGAAGGCAGCCAATGAGAAGAAATCT
ATGCAGACAAGAGAAAAATGATGACTATTTGGAACACTTGGGTGCTACTGCTAACTAGGT
GTATCATAAGCTCCATGATCAAGATTTTGTAGAGTGAACAGTCAGTACATATGTTATATC
CTTATGAAAATATTCTAAACTTTACCTTTCAGCCTTAGTGTGATGTTTCAGAAACATTCT
TCAAAGAATAAAACACTAACCATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18088948|gb|AAH21174.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18088948|gb|AAH21174.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               247-504, gnl|bosTau2|chr20 (4673782-4673521)
               

               
               247-504, gnl|Hg17|chr5 (70239315-70239586)
               

               
               247-504, gnl|Mm7|chr13 (97186589-97186852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-504, gnl|bosTau2|chr20 (4673782-4673521)
               

               
               247-504, gnl|Hg17|chr5 (70239315-70239586)
               

               
               247-504, gnl|Mm7|chr13 (97186589-97186852)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cte (0.87822)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               tes (0.207814)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.87822)
               

               
               elu (0.385356)
               

               
               vin (0.332557)
               

               
               tes (0.207814)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)

	247-504, gnl\|bosTau2\|chr20 (4673782-4673521)
	247-504, gnl\|Hg17\|chr5 (70239315-70239586)
	247-504, gnl\|Mm7\|chr13 (97186589-97186852)

	cte (0.87822)
	elu (0.385356)
	vin (0.332557)
	tes (0.207814)
	nje (0.16592)
	cki (0.165235)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	lyg (0.133103)