Non-Coding RNA Search

Ss1.1-rcte13_a15.5

Sequence:


               
               AAAGTACAATGTCGACCAGCCGCAAGTTAAAGAGCCATGGCATGAGGAGGGGCAAGAACC
GCGCTCCTCACAAGGGAGTTAAGAGAGGTGGCAGCAAAAGAAAATACCGGAAGGGCAGCC
TGAAGAGTAGAAAACGGTGCGATGATGCCAATCGCAATTACCGCTCCCACTTGTGACTCC
ACCAGCAGGCTCTTCCCTGGTAGACTTCAAGGACACCAGGCAGCAACAGAGAACAGAAGG
AGGACTACCAAGGAGACCTGAAGTTAGGTCAATGCCAGAGAAGAGCCTATCATGTGGGTA
AAATGCCAGTTGCGACAAAATGAGGAATGTATATGTTGGCTGTTTCTCTCCAACATCTCA
ATAAAATTTTGAAAACTGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGTACAATGTCGACCAGCCGCAAGTTAAAGAGCCATGGCATGAGGAGGGGCAAGAACC
GCGCTCCTCACAAGGGAGTTAAGAGAGGTGGCAGCAAAAGAAAATACCGGAAGGGCAGCC
TGAAGAGTAGAAAACGGTGCGATGATGCCAATCGCAATTACCGCTCCCACTTGTGACTCC
ACCAGCAGGCTCTTCCCTGGTAGACTTCAAGGACACCAGGCAGCAACAGAGAACAGAAGG
AGGACTACCAAGGAGACCTGAAGTTAGGTCAATGCCAGAGAAGAGCCTATCATGTGGGTA
AAATGCCAGTTGCGACAAAATGAGGAATGTATATGTTGGCTGTTTCTCTCCAACATCTCA
ATAAAATTTTGAAAACTGAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               STP1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               STP1_PIG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               187-300, - strand, RNAz p=0.739874

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               187-300, - strand, RNAz p=0.739874

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               147-380, gnl|bosTau2|chr2 (63759132-63758899)
               

               
               147-380, gnl|canFam2|chr37 (26742435-26742569)
               

               
               147-380, gnl|hg17|chr2 (217549689-217549861)
               

               
               147-380, gnl|Hg17|chr2 (217549925-217549688)
               

               
               147-380, gnl|mm7|chr1 (73256954-73257123)
               

               
               147-380, gnl|Mm7|chr1 (73257187-73256950)
               

               
               147-380, gnl|monDom2|scaffold_39 (4161119-4160937)
               

               
               147-380, gnl|oryCun1|scaffold_207345 (68270-68444)
               

               
               147-380, gnl|panTro1|chr13 (107705418-107705590)
               

               
               147-380, gnl|rheMac2|chr12 (80667223-80667395)
               

               
               147-380, gnl|rn3|chr9 (72544753-72544924)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-380, gnl|bosTau2|chr2 (63759132-63758899)
               

               
               147-380, gnl|canFam2|chr37 (26742435-26742569)
               

               
               147-380, gnl|hg17|chr2 (217549689-217549861)
               

               
               147-380, gnl|Hg17|chr2 (217549925-217549688)
               

               
               147-380, gnl|mm7|chr1 (73256954-73257123)
               

               
               147-380, gnl|Mm7|chr1 (73257187-73256950)
               

               
               147-380, gnl|monDom2|scaffold_39 (4161119-4160937)
               

               
               147-380, gnl|oryCun1|scaffold_207345 (68270-68444)
               

               
               147-380, gnl|panTro1|chr13 (107705418-107705590)
               

               
               147-380, gnl|rheMac2|chr12 (80667223-80667395)
               

               
               147-380, gnl|rn3|chr9 (72544753-72544924)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (7.61124)
               

               
               tes (1.24688)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (7.61124)
               

               
               tes (1.24688)

	147-380, gnl\|bosTau2\|chr2 (63759132-63758899)
	147-380, gnl\|canFam2\|chr37 (26742435-26742569)
	147-380, gnl\|hg17\|chr2 (217549689-217549861)
	147-380, gnl\|Hg17\|chr2 (217549925-217549688)
	147-380, gnl\|mm7\|chr1 (73256954-73257123)
	147-380, gnl\|Mm7\|chr1 (73257187-73256950)
	147-380, gnl\|monDom2\|scaffold_39 (4161119-4160937)
	147-380, gnl\|oryCun1\|scaffold_207345 (68270-68444)
	147-380, gnl\|panTro1\|chr13 (107705418-107705590)
	147-380, gnl\|rheMac2\|chr12 (80667223-80667395)
	147-380, gnl\|rn3\|chr9 (72544753-72544924)