Non-Coding RNA Search

Ss1.1-rcte15_e19.5

Sequence:


               
               AACCATACTCCTCAGGCTCTCTGTCAGGACTTGTGAAATTTGAAAATAAGAAGAATGCGA
CACCCAGAACTAATTTGAAGTCCCCTATTTCTGAGCATGTAAATTCTTCTGTCAAAAAAG
AGCAAAAGGTTTCCACTCGCCCATCATCTAAGAAAACGTACTCCTTACGGAGTCAGGCAT
CCACAATCAGTATAAATGTGCCCACTAAGAAAAAAGAAGGAGCGCTACAGAAATTTGGAG
ACTTCTTACAACATTCTCCAACTATTCTTCAATCAAAAGCAAAGAAGATAATTGAAACAA
TGAGCTCTTCAAAGCTCTCAAATGTAGAAGTAAGTAAAGAAACTGTGTCTCGACCAAAAC
GAGCCAAACGGAAATTGTATACAAGTGAAATTTCTTCGCCTATTGATATATCTGGCCAGG
TGATTTTGATGGACCATAAAGTGAAAGAAAGTGATCATCAGATTCTGAAACGACGACTTC
GAACTAAAACAGCCAAATAAATCACTTATAGAGAATGGTTTAATATATTTTATATTCATA
ATCATTGTAACTTGCATCCCTGACTTTTTAAAGTTAATTGTATATACTGTGATACGTAAA
ATCCCTTTGTATATACATTGCTATTTTATAATAGTATAATTTTAATTCAATAAAGAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCATACTCCTCAGGCTCTCTGTCAGGACTTGTGAAATTTGAAAATAAGAAGAATGCGA
CACCCAGAACTAATTTGAAGTCCCCTATTTCTGAGCATGTAAATTCTTCTGTCAAAAAAG
AGCAAAAGGTTTCCACTCGCCCATCATCTAAGAAAACGTACTCCTTACGGAGTCAGGCAT
CCACAATCAGTATAAATGTGCCCACTAAGAAAAAAGAAGGAGCGCTACAGAAATTTGGAG
ACTTCTTACAACATTCTCCAACTATTCTTCAATCAAAAGCAAAGAAGATAATTGAAACAA
TGAGCTCTTCAAAGCTCTCAAATGTAGAAGTAAGTAAAGAAACTGTGTCTCGACCAAAAC
GAGCCAAACGGAAATTGTATACAAGTGAAATTTCTTCGCCTATTGATATATCTGGCCAGG
TGATTTTGATGGACCATAAAGTGAAAGAAAGTGATCATCAGATTCTGAAACGACGACTTC
GAACTAAAACAGCCAAATAAATCACTTATAGAGAATGGTTTAATATATTTTATATTCATA
ATCATTGTAACTTGCATCCCTGACTTTTTAAAGTTAATTGTATATACTGTGATACGTAAA
ATCCCTTTGTATATACATTGCTATTTTATAATAGTATAATTTTAATTCAATAAAGAAACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879533|ref|XP_610027.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879533|ref|XP_610027.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               26-658, gnl|bosTau2|chr21 (32328899-32328268)
               

               
               26-658, gnl|Hg17|chr10 (91518025-91523919)
               

               
               26-658, gnl|Mm7|chr19 (34673699-34677030)
               


               
               332-531, gnl|bosTau2|chr11 (67802391-67802193)
               

               
               332-531, gnl|Hg17|chr10 (91522474-91523803)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-658, gnl|bosTau2|chr21 (32328899-32328268)
               

               
               26-658, gnl|Hg17|chr10 (91518025-91523919)
               

               
               26-658, gnl|Mm7|chr19 (34673699-34677030)
               


               
               332-531, gnl|bosTau2|chr11 (67802391-67802193)
               

               
               332-531, gnl|Hg17|chr10 (91522474-91523803)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	26-658, gnl\|bosTau2\|chr21 (32328899-32328268)
	26-658, gnl\|Hg17\|chr10 (91518025-91523919)
	26-658, gnl\|Mm7\|chr19 (34673699-34677030)

	332-531, gnl\|bosTau2\|chr11 (67802391-67802193)
	332-531, gnl\|Hg17\|chr10 (91522474-91523803)