Non-Coding RNA Search

Ss1.1-rcte17_b23.5

Sequence:


               
               AGAAGCTCTACATTCCTCGAAGTACAGCCACTGCTGCCTTAGGAGCTGCTGCACGGGTGA
GCCACTTCCAGGAGCCTCCTCCACTGGTACCCCAGTGTGAAAAGGATGGAAGCATGAGGG
AGGGAGGAAGGGAGGAAAAAATAAATCAGATACTTAGGATGGGGTGACTTCCCAGGCCAA
AATAAGAAGGAGGTATTGAGACAAAATCATATTTTGATAGTTGATGCCTTTGTCTTTCTG
CGTGACTCTTTCTTAGCTTAATTATGCTGGCAGTCCCCTTTCTTGTGTAAGCATTAATGT
TTAATGTTAATTTTCCTTTTTATGGATGTTTATTATTCTGTATAGTTTTGTTCACCTTTG
TTCAGTGTAGTAATTTAAAAGAGTTTTTAGGGTTTTTTGTTTTTAAGTTTCTGTAAATGT
TTTGCTTGTGTATATCATGACTGTTAAATGTAAACTGAAAAACTACTGTTTTCATGATCC
ATATTTAGTAAGACAAAAATTCTCACATCCCTATCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCTCTACATTCCTCGAAGTACAGCCACTGCTGCCTTAGGAGCTGCTGCACGGGTGA
GCCACTTCCAGGAGCCTCCTCCACTGGTACCCCAGTGTGAAAAGGATGGAAGCATGAGGG
AGGGAGGAAGGGAGGAAAAAATAAATCAGATACTTAGGATGGGGTGACTTCCCAGGCCAA
AATAAGAAGGAGGTATTGAGACAAAATCATATTTTGATAGTTGATGCCTTTGTCTTTCTG
CGTGACTCTTTCTTAGCTTAATTATGCTGGCAGTCCCCTTTCTTGTGTAAGCATTAATGT
TTAATGTTAATTTTCCTTTTTATGGATGTTTATTATTCTGTATAGTTTTGTTCACCTTTG
TTCAGTGTAGTAATTTAAAAGAGTTTTTAGGGTTTTTTGTTTTTAAGTTTCTGTAAATGT
TTTGCTTGTGTATATCATGACTGTTAAATGTAAACTGAAAAACTACTGTTTTCATGATCC
ATATTTAGTAAGACAAAAATTCTCACATCCCTATCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1-156, + strand, RNAz p=0.842111

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-156, + strand, RNAz p=0.842111

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_173533, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_173533, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-515, gnl|bosTau2|chr16 (46592995-46593508)
               

               
               1-515, gnl|Hg17|chr1 (176391620-176392112)
               

               
               1-515, gnl|Mm7|chr1 (156218309-156217866)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-515, gnl|bosTau2|chr16 (46592995-46593508)
               

               
               1-515, gnl|Hg17|chr1 (176391620-176392112)
               

               
               1-515, gnl|Mm7|chr1 (156218309-156217866)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cte (0.58548)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)

	1-515, gnl\|bosTau2\|chr16 (46592995-46593508)
	1-515, gnl\|Hg17\|chr1 (176391620-176392112)
	1-515, gnl\|Mm7\|chr1 (156218309-156217866)