Non-Coding RNA Search

Ss1.1-rcte17_h23.5

Sequence:


               
               CAATTATGTTTCTTAGAGCTCCACGTGGTTTCTGGGTCAAATGAAAACCAACCATTTGCT
TTTCTATTCATCTTTATAATGGACTTTCAGAAGTGCATTAGACAAGGTCCCTAACCACTT
TCGGATCCTTTCTGTTTTGCTGCAACCATATTCCTTAAAAAAAACACCCACACCCTTCTC
GAAAAGCAGAATAAAAGGAGCAGAATATAAAAATCAAAAGTCTGAAGAGTCTGTAAAGAA
AAACCAACTGTAACTGGTGCTTAAAGCTGATCCAGAGAGTTTAAAGCAACATGACATATG
AACCATGCATTTGGTCCTTTTTTCTGGAAGCGCCATCCGCTCATTGCAGGAGCTCCTAGG
CCATGGCAGTTGGTCAGCTCAGACTTCGAGTGTGTCTCTTTGATGTGGTGTACTTGTACT
GGCCTTGTCAAAAAAGACGTGATGCTTCTCAGAACCTGTTCCATCTGTACGCCATTGTTC
ATGCCTTAAGAAATGCAAAGATGTACAATAAATCATTTTTTAAATGTGTGCTCCTAGGTT
TATGTGAAGGACAGATTTTTTGAATCATGGCATGATTCGCTTTCTGGGATCAGAAGAATT
ATGAGACTAATTTAAATGGACTAAAAGAAGTAAAGAACATAATGTTTTACTTTGATATAT
TGGTTACTGTATCATATGTCTGAAGGGCAAGAAGGAAAATGTGTGCTAAGTAGATCTCTG
TATTCACGTTGCTCGTCAATTTCATGTCCTGCCTACAGTTAATAAACCATCCTTCTTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATTATGTTTCTTAGAGCTCCACGTGGTTTCTGGGTCAAATGAAAACCAACCATTTGCT
TTTCTATTCATCTTTATAATGGACTTTCAGAAGTGCATTAGACAAGGTCCCTAACCACTT
TCGGATCCTTTCTGTTTTGCTGCAACCATATTCCTTAAAAAAAACACCCACACCCTTCTC
GAAAAGCAGAATAAAAGGAGCAGAATATAAAAATCAAAAGTCTGAAGAGTCTGTAAAGAA
AAACCAACTGTAACTGGTGCTTAAAGCTGATCCAGAGAGTTTAAAGCAACATGACATATG
AACCATGCATTTGGTCCTTTTTTCTGGAAGCGCCATCCGCTCATTGCAGGAGCTCCTAGG
CCATGGCAGTTGGTCAGCTCAGACTTCGAGTGTGTCTCTTTGATGTGGTGTACTTGTACT
GGCCTTGTCAAAAAAGACGTGATGCTTCTCAGAACCTGTTCCATCTGTACGCCATTGTTC
ATGCCTTAAGAAATGCAAAGATGTACAATAAATCATTTTTTAAATGTGTGCTCCTAGGTT
TATGTGAAGGACAGATTTTTTGAATCATGGCATGATTCGCTTTCTGGGATCAGAAGAATT
ATGAGACTAATTTAAATGGACTAAAAGAAGTAAAGAACATAATGTTTTACTTTGATATAT
TGGTTACTGTATCATATGTCTGAAGGGCAAGAAGGAAAATGTGTGCTAAGTAGATCTCTG
TATTCACGTTGCTCGTCAATTTCATGTCCTGCCTACAGTTAATAAACCATCCTTCTTCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-221, + strand, RNAz p=0.824499

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-221, + strand, RNAz p=0.824499

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145739, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145739, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-306, gnl|bosTau2|chr2 (8809612-8809308)
               

               
               1-306, gnl|Hg17|chr2 (179085851-179086184)
               

               
               1-306, gnl|Mm7|chr2 (76439756-76440073)
               


               
               328-780, gnl|bosTau2|chr2 (8809307-8808855)
               

               
               328-780, gnl|Hg17|chr2 (179086189-179086639)
               

               
               328-780, gnl|Mm7|chr2 (76440094-76440537)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-306, gnl|bosTau2|chr2 (8809612-8809308)
               

               
               1-306, gnl|Hg17|chr2 (179085851-179086184)
               

               
               1-306, gnl|Mm7|chr2 (76439756-76440073)
               


               
               328-780, gnl|bosTau2|chr2 (8809307-8808855)
               

               
               328-780, gnl|Hg17|chr2 (179086189-179086639)
               

               
               328-780, gnl|Mm7|chr2 (76440094-76440537)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tra (0.369276)
               

               
               cte (0.29274)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.369276)
               

               
               cte (0.29274)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               ret (0.128733)

	1-306, gnl\|bosTau2\|chr2 (8809612-8809308)
	1-306, gnl\|Hg17\|chr2 (179085851-179086184)
	1-306, gnl\|Mm7\|chr2 (76439756-76440073)

	328-780, gnl\|bosTau2\|chr2 (8809307-8808855)
	328-780, gnl\|Hg17\|chr2 (179086189-179086639)
	328-780, gnl\|Mm7\|chr2 (76440094-76440537)

	tra (0.369276)
	cte (0.29274)
	bfe (0.149858)
	liv (0.146284)
	pla (0.133672)
	ova (0.129132)
	ret (0.128733)