Non-Coding RNA Search

Ss1.1-rcte21_h10.5

Sequence:


               
               GAAATTATTGCTGTTTTGATGATTTCCTCCTAACTATGAAAGGAAGGGCTGAGTTTACAA
TTTAAAGTCAACATTACCTGGGACCAGTGGAATGGGATTACATTTCTTCTTTGGGAATAT
TTTCCACCTGGTATTGATAAAATGAATTCATATGCAATTCACGGATCGGGGATTGGAAGA
ATTTATGAAGCCGGCACAGACAGCACCTGGTCCTTCTGCTCTCCAGTGGTGATGCATTTG
CACCATCGTATTGAGTATTTCAAACCTTTCAACCTGGAGTGGATTATGGGAGACAACTGG
AAGCAGCAAGACTCAGAACTGTGGAAAGAGCTTTGCTGTGATTCTTTACCTTCTGACAAC
CTGGGTTATAACTCATAAAGAAAGGCACTTAACAAATAGAACTCTACTCACTACCACCTC
AGTTGGACAGCTGAAGTAAAATCATTGTTTGCTACCACTGTAAATATTCCAACAATGTGC
CAGAAATAAATCATTTAATTGAGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAATTATTGCTGTTTTGATGATTTCCTCCTAACTATGAAAGGAAGGGCTGAGTTTACAA
TTTAAAGTCAACATTACCTGGGACCAGTGGAATGGGATTACATTTCTTCTTTGGGAATAT
TTTCCACCTGGTATTGATAAAATGAATTCATATGCAATTCACGGATCGGGGATTGGAAGA
ATTTATGAAGCCGGCACAGACAGCACCTGGTCCTTCTGCTCTCCAGTGGTGATGCATTTG
CACCATCGTATTGAGTATTTCAAACCTTTCAACCTGGAGTGGATTATGGGAGACAACTGG
AAGCAGCAAGACTCAGAACTGTGGAAAGAGCTTTGCTGTGATTCTTTACCTTCTGACAAC
CTGGGTTATAACTCATAAAGAAAGGCACTTAACAAATAGAACTCTACTCACTACCACCTC
AGTTGGACAGCTGAAGTAAAATCATTGTTTGCTACCACTGTAAATATTCCAACAATGTGC
CAGAAATAAATCATTTAATTGAGAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               2-180, gnl|bosTau2|chr17 (18089383-18089561)
               

               
               2-180, gnl|Hg17|chr4 (130456114-130456304)
               

               
               2-180, gnl|Mm7|chr3 (41740117-41740300)
               


               
               243-502, gnl|bosTau2|chr17 (18091610-18091871)
               

               
               243-502, gnl|Hg17|chr4 (130457773-130458037)
               

               
               243-502, gnl|Mm7|chr3 (41747207-41747438)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-180, gnl|bosTau2|chr17 (18089383-18089561)
               

               
               2-180, gnl|Hg17|chr4 (130456114-130456304)
               

               
               2-180, gnl|Mm7|chr3 (41740117-41740300)
               


               
               243-502, gnl|bosTau2|chr17 (18091610-18091871)
               

               
               243-502, gnl|Hg17|chr4 (130457773-130458037)
               

               
               243-502, gnl|Mm7|chr3 (41747207-41747438)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cte (0.58548)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               nbm (0.0993246)

	2-180, gnl\|bosTau2\|chr17 (18089383-18089561)
	2-180, gnl\|Hg17\|chr4 (130456114-130456304)
	2-180, gnl\|Mm7\|chr3 (41740117-41740300)

	243-502, gnl\|bosTau2\|chr17 (18091610-18091871)
	243-502, gnl\|Hg17\|chr4 (130457773-130458037)
	243-502, gnl\|Mm7\|chr3 (41747207-41747438)