Ss1.1-rcte24_l17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACGGGGCTGCGGCTACGAGCCATCGACAAGGGGGTCTTTGTGCAGCTGGTCCAGGCCAA CACCCCCGCGTCGCTGGTGGGGTTGCGCTTTGGAGACCAGATCCTGCAGATCGATGGGCG TGACTGTGCCGGGTGGAGCACGGACAAAGCCCACCGGGCGGTGAAGAAGGCATCAGCTGA AAAGATCATCATGATCATTCGGGACAGGCCGTTCCAGCGAACCGTCACCATGCACAAGGA CAGCACGGGCCATGTCGGCTTCGTCATCAAGAAGGGAAAGGTCATCTCTTTGGTCAAAGG GAGCTCGGCGGCCCGCAACGGGCTCCTCACCAACCACTACGTGTGCGAGGTGAACGGGCA GAACGTCATCGGGCTGAAGGACAAAGAGGTCACAGAGATTCTGGCCACAGCTGGAAATGT CATCACCTTGACCATCATCCCCAGCGTGATCTACGAGCACATGGTCAAAAAGTTGTCCCC GACCCTGCTCCACCACACCATGGACCACTCCATCCCGGATGTCTGAGGCCCCAGGAGAGC AGCTTAGCCCCCCCANCCCCCTGCAGGGAAGGGAGGGCCCCTGGATGACAGGCTGCTGCC TGGGGGAGGGGCTGTCTCAAGGGGGNGCTTACTACAGGTGGGGCNACACTGGATCCCCTG GGTCTGTCATTTATTTAAACACACTGGCCTCCTTGGATTCTCAGACTCTTAACTGAGCTA AGGCGGGGGCAGGGCCCACAGGCAGTGATTCTCTGTGCCGANTTAAATGCTGGGCATGTA GGCAGGCTGGCTAAAGTTGCAGCTGGGTCCTTNTCAAAATTTTGCCTCTACCAGTAAAAC AGTTCCATGTTTTGAGAGAATGCAGNTTTTGTGAGAATTGTTTGTTTCCTTGACTTGCTC TTTGTCACAAACTGTATATAGTTATAACTGTCTTTTGAATAAAGAGATGATTTTAAATAA AATCCCTTTTTAAAAGCAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACGGGGCTGCGGCTACGAGCCATCGACAAGGGGGTCTTTGTGCAGCTGGTCCAGGCCAA CACCCCCGCGTCGCTGGTGGGGTTGCGCTTTGGAGACCAGATCCTGCAGATCGATGGGCG TGACTGTGCCGGGTGGAGCACGGACAAAGCCCACCGGGCGGTGAAGAAGGCATCAGCTGA AAAGATCATCATGATCATTCGGGACAGGCCGTTCCAGCGAACCGTCACCATGCACAAGGA CAGCACGGGCCATGTCGGCTTCGTCATCAAGAAGGGAAAGGTCATCTCTTTGGTCAAAGG GAGCTCGGCGGCCCGCAACGGGCTCCTCACCAACCACTACGTGTGCGAGGTGAACGGGCA GAACGTCATCGGGCTGAAGGACAAAGAGGTCACAGAGATTCTGGCCACAGCTGGAAATGT CATCACCTTGACCATCATCCCCAGCGTGATCTACGAGCACATGGTCAAAAAGTTGTCCCC GACCCTGCTCCACCACACCATGGACCACTCCATCCCGGATGTCTGAGGCCCCAGGAGAGC AGCTTAGCCCCCCCANCCCCCTGCAGGGAAGGGAGGGCCCCTGGATGACAGGCTGCTGCC TGGGGGAGGGGCTGTCTCAAGGGGGNGCTTACTACAGGTGGGGCNACACTGGATCCCCTG GGTCTGTCATTTATTTAAACACACTGGCCTCCTTGGATTCTCAGACTCTTAACTGAGCTA AGGCGGGGGCAGGGCCCACAGGCAGTGATTCTCTGTGCCGANTTAAATGCTGGGCATGTA GGCAGGCTGGCTAAAGTTGCAGCTGGGTCCTTNTCAAAATTTTGCCTCTACCAGTAAAAC AGTTCCATGTTTTGAGAGAATGCAGNTTTTGTGAGAATTGTTTGTTTCCTTGACTTGCTC TTTGTCACAAACTGTATATAGTTATAACTGTCTTTTGAATAAAGAGATGATTTTAAATAA AATCCCTTTTTAAAAGCAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 243-362, + strand, RNAz p=0.805422 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 243-362, + strand, RNAz p=0.805422 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 204-386, gnl|bosTau2|chr14 (13064464-13064282) | |
| 204-386, gnl|Hg17|chr8 (59654732-59654915) | |
| 204-386, gnl|Mm7|chr4 (6320090-6320269) | |
| 205-380, gnl|bosTau2|chr13 (41275209-41275034) | |
| 205-380, gnl|canFam2|chr24 (22663230-22663047) | |
| 205-380, gnl|danRer3|chr23 (19070757-19070940) | |
| 205-380, gnl|dasNov1|scaffold_206328 (1053-1226) | |
| 205-380, gnl|echTel1|scaffold_305716 (134136-134316) | |
| 205-380, gnl|fr1|chrUn (190137715-190137533) | |
| 205-380, gnl|hg17|chr20 (1240976-1241159) | |
| 205-380, gnl|Hg17|chr20 (1241155-1240980) | |
| 205-380, gnl|loxAfr1|scaffold_11936 (48964-49141) | |
| 205-380, gnl|mm7|chr2 (151328357-151328174) | |
| 205-380, gnl|Mm7|chr2 (151328176-151328351) | |
| 205-380, gnl|monDom2|scaffold_38 (3635916-3636099) | |
| 205-380, gnl|oryCun1|scaffold_175218 (44023-44206) | |
| 205-380, gnl|panTro1|chr21 (1272237-1272421) | |
| 205-380, gnl|rheMac2|chr10 (34567419-34567602) | |
| 205-380, gnl|rn3|chr3 (141822260-141822077) | |
| 205-380, gnl|tetNig1|chrUn_random (165184188-165184005) | |
| 205-380, gnl|xenTro1|scaffold_8 (3365238-3365059) | |
| 472-979, gnl|bosTau2|chr13 (41273198-41272639) | |
| 472-979, gnl|Hg17|chr20 (1239139-1238601) | |
| 472-979, gnl|Mm7|chr2 (151330390-151330881) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 204-386, gnl|bosTau2|chr14 (13064464-13064282) | |
| 204-386, gnl|Hg17|chr8 (59654732-59654915) | |
| 204-386, gnl|Mm7|chr4 (6320090-6320269) | |
| 205-380, gnl|bosTau2|chr13 (41275209-41275034) | |
| 205-380, gnl|canFam2|chr24 (22663230-22663047) | |
| 205-380, gnl|danRer3|chr23 (19070757-19070940) | |
| 205-380, gnl|dasNov1|scaffold_206328 (1053-1226) | |
| 205-380, gnl|echTel1|scaffold_305716 (134136-134316) | |
| 205-380, gnl|fr1|chrUn (190137715-190137533) | |
| 205-380, gnl|hg17|chr20 (1240976-1241159) | |
| 205-380, gnl|Hg17|chr20 (1241155-1240980) | |
| 205-380, gnl|loxAfr1|scaffold_11936 (48964-49141) | |
| 205-380, gnl|mm7|chr2 (151328357-151328174) | |
| 205-380, gnl|Mm7|chr2 (151328176-151328351) | |
| 205-380, gnl|monDom2|scaffold_38 (3635916-3636099) | |
| 205-380, gnl|oryCun1|scaffold_175218 (44023-44206) | |
| 205-380, gnl|panTro1|chr21 (1272237-1272421) | |
| 205-380, gnl|rheMac2|chr10 (34567419-34567602) | |
| 205-380, gnl|rn3|chr3 (141822260-141822077) | |
| 205-380, gnl|tetNig1|chrUn_random (165184188-165184005) | |
| 205-380, gnl|xenTro1|scaffold_8 (3365238-3365059) | |
| 472-979, gnl|bosTau2|chr13 (41273198-41272639) | |
| 472-979, gnl|Hg17|chr20 (1239139-1238601) | |
| 472-979, gnl|Mm7|chr2 (151330390-151330881) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cte (0.29274) |