Non-Coding RNA Search

Ss1.1-rcte36_m16.5

Sequence:


               
               GGATGGATTTTGTATGATCATGAGGTTTCAATACACTTTTGAGGTAGCTGTGCCATCAAC
TAGCCAGACAGTCTCAGAACTTGGAAAAAATGTCACGCTCACCTGTCAGCCTCAAATGAA
GTGGCAGTTACAACAAGTTACATGGGAAAAGATCCAGCCTCATCAGATCGACCTCCTAAC
TAGCTGCAACTTGTCCCAGGGAAGTAGTTACACTTCAAAGTACCCAAGACAGATACTGAG
CAACTGCCACCAGGGAATGAGAAGAACCTTCATCACCATGCCCCACGCAACCGCCTCTGA
CTCAGGGCTCTACCGCTGTTGTTTCAAAGCCAGCACAGGCGAAATTGAAACTTTCGTGAT
GAGACTGACTGTAACTGAAGCAAAAGGATACCAAACAAAATCAGCAAATGGAAAAGATGC
ATGAGCCAGTTAGGTAAAATCAATAACCATTATATCCTCTTCATGGTTGGAGGAGCAGCT
TTGTTGTTGCTGTTGGTTCTCCTAATTACCATTGTCACTGTCATTTCTTATAAGAGAAGG
AGAAGGAGACAGAAAAGAGGCCTATTTAAAGAGTACTGGGACACACCATATAAGTCAGCC
AACAACCTCAGAAGTCCAGTCCCAACCAATCAACCATCAGATGACACAGGGGAGGATGTT
TATGTCAACTACCCAACCTTCTCTCGAAGACCAAAGACTAGAATCTAAGCTTTTTCTTTC
ATCTGAGAAAATTAATGATAGCCTCATGTAAAAAAAAAAAAAAAAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGGATTTTGTATGATCATGAGGTTTCAATACACTTTTGAGGTAGCTGTGCCATCAAC
TAGCCAGACAGTCTCAGAACTTGGAAAAAATGTCACGCTCACCTGTCAGCCTCAAATGAA
GTGGCAGTTACAACAAGTTACATGGGAAAAGATCCAGCCTCATCAGATCGACCTCCTAAC
TAGCTGCAACTTGTCCCAGGGAAGTAGTTACACTTCAAAGTACCCAAGACAGATACTGAG
CAACTGCCACCAGGGAATGAGAAGAACCTTCATCACCATGCCCCACGCAACCGCCTCTGA
CTCAGGGCTCTACCGCTGTTGTTTCAAAGCCAGCACAGGCGAAATTGAAACTTTCGTGAT
GAGACTGACTGTAACTGAAGCAAAAGGATACCAAACAAAATCAGCAAATGGAAAAGATGC
ATGAGCCAGTTAGGTAAAATCAATAACCATTATATCCTCTTCATGGTTGGAGGAGCAGCT
TTGTTGTTGCTGTTGGTTCTCCTAATTACCATTGTCACTGTCATTTCTTATAAGAGAAGG
AGAAGGAGACAGAAAAGAGGCCTATTTAAAGAGTACTGGGACACACCATATAAGTCAGCC
AACAACCTCAGAAGTCCAGTCCCAACCAATCAACCATCAGATGACACAGGGGAGGATGTT
TATGTCAACTACCCAACCTTCTCTCGAAGACCAAAGACTAGAATCTAAGCTTTTTCTTTC
ATCTGAGAAAATTAATGATAGCCTCATGTAAAAAAAAAAAAAAAAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CD226_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               CD226_HUMAN

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               26-375, gnl|bosTau2|chr24 (8018488-8018140)
               

               
               26-375, gnl|canFam2|chr1 (11413275-11412759)
               

               
               26-375, gnl|dasNov1|scaffold_149 (236133-235632)
               

               
               26-375, gnl|echTel1|scaffold_286313 (42773-43273)
               

               
               26-375, gnl|hg17|chr18 (65713840-65714341)
               

               
               26-375, gnl|Hg17|chr18 (65714267-65713922)
               

               
               26-375, gnl|loxAfr1|scaffold_61270 (8541-9037)
               

               
               26-375, gnl|mm7|chr18 (89570407-89569892)
               

               
               26-375, gnl|Mm7|chr18 (89569959-89570307)
               

               
               26-375, gnl|monDom2|scaffold_21 (5909051-5908545)
               

               
               26-375, gnl|oryCun1|scaffold_139369 (11794-11303)
               

               
               26-375, gnl|panTro1|chr17 (62690767-62691268)
               

               
               26-375, gnl|rheMac2|chr18 (63481471-63481956)
               

               
               26-375, gnl|rn3|chr18 (86204132-86203622)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-375, gnl|bosTau2|chr24 (8018488-8018140)
               

               
               26-375, gnl|canFam2|chr1 (11413275-11412759)
               

               
               26-375, gnl|dasNov1|scaffold_149 (236133-235632)
               

               
               26-375, gnl|echTel1|scaffold_286313 (42773-43273)
               

               
               26-375, gnl|hg17|chr18 (65713840-65714341)
               

               
               26-375, gnl|Hg17|chr18 (65714267-65713922)
               

               
               26-375, gnl|loxAfr1|scaffold_61270 (8541-9037)
               

               
               26-375, gnl|mm7|chr18 (89570407-89569892)
               

               
               26-375, gnl|Mm7|chr18 (89569959-89570307)
               

               
               26-375, gnl|monDom2|scaffold_21 (5909051-5908545)
               

               
               26-375, gnl|oryCun1|scaffold_139369 (11794-11303)
               

               
               26-375, gnl|panTro1|chr17 (62690767-62691268)
               

               
               26-375, gnl|rheMac2|chr18 (63481471-63481956)
               

               
               26-375, gnl|rn3|chr18 (86204132-86203622)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	26-375, gnl\|bosTau2\|chr24 (8018488-8018140)
	26-375, gnl\|canFam2\|chr1 (11413275-11412759)
	26-375, gnl\|dasNov1\|scaffold_149 (236133-235632)
	26-375, gnl\|echTel1\|scaffold_286313 (42773-43273)
	26-375, gnl\|hg17\|chr18 (65713840-65714341)
	26-375, gnl\|Hg17\|chr18 (65714267-65713922)
	26-375, gnl\|loxAfr1\|scaffold_61270 (8541-9037)
	26-375, gnl\|mm7\|chr18 (89570407-89569892)
	26-375, gnl\|Mm7\|chr18 (89569959-89570307)
	26-375, gnl\|monDom2\|scaffold_21 (5909051-5908545)
	26-375, gnl\|oryCun1\|scaffold_139369 (11794-11303)
	26-375, gnl\|panTro1\|chr17 (62690767-62691268)
	26-375, gnl\|rheMac2\|chr18 (63481471-63481956)
	26-375, gnl\|rn3\|chr18 (86204132-86203622)