Non-Coding RNA Search

Ss1.1-rcte40_g21.5

Sequence:


               
               CAGAGTGGGCCATGGGTTCCCGCTGTGCCAAGCTCAGCACGGGCCACGGCCGGGGCCACG
AATCGTCCATGAAGAAGCTGGTGGCCTGCGTGAGTCAGGATAACTTCTCCTTGTCGTCGG
AGGGCGAGGAAGAGGAGGAGGGAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGC
TCCCTGTGCAGGGCAAGCTGTTGCTGATGGAGCCCGAGCAGCAGGAGGAAGGCACCCAGA
ATGACCTTGTGGCCCAGCAGAGCCCCGAGCCCAAGCAGACGCACTCCTGACCCACGGCGA
CGACGACGACGACGACGGCCTGGGAAGAGGTGCCTGCACTGCTCCAGAGCAGACTTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGAGTGGGCCATGGGTTCCCGCTGTGCCAAGCTCAGCACGGGCCACGGCCGGGGCCACG
AATCGTCCATGAAGAAGCTGGTGGCCTGCGTGAGTCAGGATAACTTCTCCTTGTCGTCGG
AGGGCGAGGAAGAGGAGGAGGGAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGGAGC
TCCCTGTGCAGGGCAAGCTGTTGCTGATGGAGCCCGAGCAGCAGGAGGAAGGCACCCAGA
ATGACCTTGTGGCCCAGCAGAGCCCCGAGCCCAAGCAGACGCACTCCTGACCCACGGCGA
CGACGACGACGACGACGGCCTGGGAAGAGGTGCCTGCACTGCTCCAGAGCAGACTTTTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NNZ6_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NNZ6_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               55-174, - strand, RNAz p=0.965646
               

               
               196-292, - strand, RNAz p=0.82921

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               55-174, - strand, RNAz p=0.965646
               

               
               196-292, - strand, RNAz p=0.82921

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               12-292, gnl|bosTau2|chr25 (10228565-10228848)
               

               
               12-292, gnl|canFam2|chr6 (34537753-34537397)
               

               
               12-292, gnl|echTel1|scaffold_203362 (817-395)
               

               
               12-292, gnl|hg17|chr16 (11274547-11274899)
               

               
               12-292, gnl|Hg17|chr16 (11274953-11274640)
               

               
               12-292, gnl|loxAfr1|scaffold_125580 (6-356)
               

               
               12-292, gnl|mm7|chr16 (10468172-10468516)
               

               
               12-292, gnl|Mm7|chr16 (10468566-10468259)
               

               
               12-292, gnl|monDom2|scaffold_17 (33240663-33240342)
               

               
               12-292, gnl|panTro1|chr18 (11606329-11606681)
               

               
               12-292, gnl|rheMac2|chr20 (11347580-11347932)
               

               
               12-292, gnl|rn3|chr10 (4815299-4814939)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-292, gnl|bosTau2|chr25 (10228565-10228848)
               

               
               12-292, gnl|canFam2|chr6 (34537753-34537397)
               

               
               12-292, gnl|echTel1|scaffold_203362 (817-395)
               

               
               12-292, gnl|hg17|chr16 (11274547-11274899)
               

               
               12-292, gnl|Hg17|chr16 (11274953-11274640)
               

               
               12-292, gnl|loxAfr1|scaffold_125580 (6-356)
               

               
               12-292, gnl|mm7|chr16 (10468172-10468516)
               

               
               12-292, gnl|Mm7|chr16 (10468566-10468259)
               

               
               12-292, gnl|monDom2|scaffold_17 (33240663-33240342)
               

               
               12-292, gnl|panTro1|chr18 (11606329-11606681)
               

               
               12-292, gnl|rheMac2|chr20 (11347580-11347932)
               

               
               12-292, gnl|rn3|chr10 (4815299-4814939)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (1.17096)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (1.17096)

	55-174, - strand, RNAz p=0.965646
	196-292, - strand, RNAz p=0.82921

	12-292, gnl\|bosTau2\|chr25 (10228565-10228848)
	12-292, gnl\|canFam2\|chr6 (34537753-34537397)
	12-292, gnl\|echTel1\|scaffold_203362 (817-395)
	12-292, gnl\|hg17\|chr16 (11274547-11274899)
	12-292, gnl\|Hg17\|chr16 (11274953-11274640)
	12-292, gnl\|loxAfr1\|scaffold_125580 (6-356)
	12-292, gnl\|mm7\|chr16 (10468172-10468516)
	12-292, gnl\|Mm7\|chr16 (10468566-10468259)
	12-292, gnl\|monDom2\|scaffold_17 (33240663-33240342)
	12-292, gnl\|panTro1\|chr18 (11606329-11606681)
	12-292, gnl\|rheMac2\|chr20 (11347580-11347932)
	12-292, gnl\|rn3\|chr10 (4815299-4814939)