Non-Coding RNA Search

Ss1.1-rcut06_c20.5

Sequence:


               
               ACACGCTATTTTCAGCCTCTCCAACTTGCAGGAACTAGACCTAAAGTCCAATAACATCCG
CACCATCGAAGAAATCATCAGTTTCCAGCACTTGAAGCGACTGACGTGTTTAAAACTGTG
GCATAACAAAATCGTGACCATCCCGCCCTCCATCACCCACGTCAAAAACCTGGAGTCCCT
TTACTTCTCTAACAACAAGCTGGAGTCGCTGCCGGTGGCAGTGTTCAGTTTACAGAAGCT
CCGATGCTTGGATGTCAGCTATAACAGCATTTCCACGATCCCGCTCGAAATAGGATTGCT
TCAGAACCTGCAGCATTTGCATCTCACGGGCAACAAAGTGGAGACTCTGCCCAAACAGTT
GTTTAAATGCGGCAAGTTGAGGACCTTGAACCTGGGGCAGAACTGCCTCACCTCCCTCCC
AGACCAGGTCGGTCAGCTCTCCCAGCTCACTCAGCTGGAGCTGAAGGGGAACTGCTTGGA
CCGCCTGCCAGCCCAGCTGGGCCAGTGTCGCCTGCTCAAGAAAGGCGGCCTGGTGGTGGA
AGGTCACCTTTTTGACACCCTGCCGCTCGAAGTCAAAGAAGCGTTGAATCAAGACATAAA
CATTCCCTTCGCAAACGGCATTTAAACTGAGACAACACGTGCACATCCGTGTGCAGAAAT
AACTCCCTAGACTGCAGATGTTCCCGTTATTGCAAGATCATGCATTTTAGGAGTAGATAC
ATCTTGAAAATACAACACAGAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACACGCTATTTTCAGCCTCTCCAACTTGCAGGAACTAGACCTAAAGTCCAATAACATCCG
CACCATCGAAGAAATCATCAGTTTCCAGCACTTGAAGCGACTGACGTGTTTAAAACTGTG
GCATAACAAAATCGTGACCATCCCGCCCTCCATCACCCACGTCAAAAACCTGGAGTCCCT
TTACTTCTCTAACAACAAGCTGGAGTCGCTGCCGGTGGCAGTGTTCAGTTTACAGAAGCT
CCGATGCTTGGATGTCAGCTATAACAGCATTTCCACGATCCCGCTCGAAATAGGATTGCT
TCAGAACCTGCAGCATTTGCATCTCACGGGCAACAAAGTGGAGACTCTGCCCAAACAGTT
GTTTAAATGCGGCAAGTTGAGGACCTTGAACCTGGGGCAGAACTGCCTCACCTCCCTCCC
AGACCAGGTCGGTCAGCTCTCCCAGCTCACTCAGCTGGAGCTGAAGGGGAACTGCTTGGA
CCGCCTGCCAGCCCAGCTGGGCCAGTGTCGCCTGCTCAAGAAAGGCGGCCTGGTGGTGGA
AGGTCACCTTTTTGACACCCTGCCGCTCGAAGTCAAAGAAGCGTTGAATCAAGACATAAA
CATTCCCTTCGCAAACGGCATTTAAACTGAGACAACACGTGCACATCCGTGTGCAGAAAT
AACTCCCTAGACTGCAGATGTTCCCGTTATTGCAAGATCATGCATTTTAGGAGTAGATAC
ATCTTGAAAATACAACACAGAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9NW37_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9NW37_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               400-559, - strand, RNAz p=0.688279
               

               
               636-744, + strand, RNAz p=0.603318

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-559, - strand, RNAz p=0.688279
               

               
               636-744, + strand, RNAz p=0.603318

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               413-504, - strand, RNAmicro p=0.937027

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               413-504, - strand, RNAmicro p=0.937027

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_018103, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_018103, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-744, gnl|bosTau2|chr3 (40813235-40812485)
               

               
               1-744, gnl|Hg17|chr1 (90112601-90113347)
               

               
               1-744, gnl|Mm7|chr5 (104990695-104991439)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-744, gnl|bosTau2|chr3 (40813235-40812485)
               

               
               1-744, gnl|Hg17|chr1 (90112601-90113347)
               

               
               1-744, gnl|Mm7|chr5 (104990695-104991439)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	400-559, - strand, RNAz p=0.688279
	636-744, + strand, RNAz p=0.603318

	1-744, gnl\|bosTau2\|chr3 (40813235-40812485)
	1-744, gnl\|Hg17\|chr1 (90112601-90113347)
	1-744, gnl\|Mm7\|chr5 (104990695-104991439)