Non-Coding RNA Search

Ss1.1-rcut07_d6.5

Sequence:


               
               TGCAGGTTTTAATCATGTAACCTTTTCATAGGAAGACATTTGATTTTTATCATGATTAAA
ATGATTCTTAGATTTAGCACAATGGAGAGGTGTAATGCCATGTTTGCTAGGTAGACAGGC
GGCGGGAGGGGAGAGGGCCCCAAGACATTTTTGTCACCATCGCTGAGTGACCGATACCCT
CTGGTGAGAACTGTGTGGAGGAGTGGGCCTTGGAGCGGAGTGGCCTCCTGTCCAAGGATT
GCTGATGGCAGAGACCTGGCCGCTGTGAATCCCACCTACCCCACCCCCCACCCTCCTGCC
TTCGGTGCAGCATCCGTTCAAGCGCCAAAAAGCTGTGGAGCTGTGGTGGCTCATCTCACA
TGTTGGTGGGTGGGGCTTGTGCTCAGTTTCAAAGGGACAGTTCAGCGAGAAGTAGCATTG
CCAATGACCAAGGACTGCTCACTTCTGATTACAGTTCTGATGTGGAAAACACAGCATTTT
GGCTCTTATAGAGCCTGTGTGAAAAGGTATGCCTATCCATCCTTTCTGAGTTTGTAACTT
CATGCTGCTAGGGCAAGATGTTTTTTGTTTCTTCGGTTCTGACCATGACTCATAAGCTGC
TTGTCATTCTTCACTGCTTGTTTGTGGTCACAGACACTCAGCACTCCTCCCATCCTGCGG
GGGTGGCTTTCAGGAAGTCCCAGCGGCTCTTTCTGTCTCAGCGTTGTTACGTTGCACGAG
AGGGTCGATCACCAAAACACTGCCTGGTCTTCAGACTTAAAAAGCACTGTGAAAGATCCT
AGAGTCATGAAAATACTGGATTTTATAGGCGTGGCACAAAAGCAGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGGTTTTAATCATGTAACCTTTTCATAGGAAGACATTTGATTTTTATCATGATTAAA
ATGATTCTTAGATTTAGCACAATGGAGAGGTGTAATGCCATGTTTGCTAGGTAGACAGGC
GGCGGGAGGGGAGAGGGCCCCAAGACATTTTTGTCACCATCGCTGAGTGACCGATACCCT
CTGGTGAGAACTGTGTGGAGGAGTGGGCCTTGGAGCGGAGTGGCCTCCTGTCCAAGGATT
GCTGATGGCAGAGACCTGGCCGCTGTGAATCCCACCTACCCCACCCCCCACCCTCCTGCC
TTCGGTGCAGCATCCGTTCAAGCGCCAAAAAGCTGTGGAGCTGTGGTGGCTCATCTCACA
TGTTGGTGGGTGGGGCTTGTGCTCAGTTTCAAAGGGACAGTTCAGCGAGAAGTAGCATTG
CCAATGACCAAGGACTGCTCACTTCTGATTACAGTTCTGATGTGGAAAACACAGCATTTT
GGCTCTTATAGAGCCTGTGTGAAAAGGTATGCCTATCCATCCTTTCTGAGTTTGTAACTT
CATGCTGCTAGGGCAAGATGTTTTTTGTTTCTTCGGTTCTGACCATGACTCATAAGCTGC
TTGTCATTCTTCACTGCTTGTTTGTGGTCACAGACACTCAGCACTCCTCCCATCCTGCGG
GGGTGGCTTTCAGGAAGTCCCAGCGGCTCTTTCTGTCTCAGCGTTGTTACGTTGCACGAG
AGGGTCGATCACCAAAACACTGCCTGGTCTTCAGACTTAAAAAGCACTGTGAAAGATCCT
AGAGTCATGAAAATACTGGATTTTATAGGCGTGGCACAAAAGCAGTCA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-822, gnl|bosTau2|chr28 (8810267-8809465)
               

               
               7-822, gnl|Hg17|chr10 (42944320-42945166)
               

               
               7-822, gnl|Mm7|chr6 (118178694-118177891)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-822, gnl|bosTau2|chr28 (8810267-8809465)
               

               
               7-822, gnl|Hg17|chr10 (42944320-42945166)
               

               
               7-822, gnl|Mm7|chr6 (118178694-118177891)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nms (0.213858)
               

               
               cut (0.169924)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               cut (0.169924)

	7-822, gnl\|bosTau2\|chr28 (8810267-8809465)
	7-822, gnl\|Hg17\|chr10 (42944320-42945166)
	7-822, gnl\|Mm7\|chr6 (118178694-118177891)