Non-Coding RNA Search

Ss1.1-rcut10_a12.5

Sequence:


               
               CATGAGCCCTATTTTAAGCATTAGGGATGATCATTTACTATAGAAATGCTGGGAACACAA
AGCCTCGATTAAAAAGGTCTATGATTTCATCCACTCTTTGAAACAAATGATTTCCCTCAG
GGGAAGGGAAAAAAGGTGATTTCATGAAATACGAAGCCATTTTACCATTTGCTTTATATA
TATGGATCCATGTTTCTGAGGAAAAGGACATTCTCAGGTGATGTATTTTTTCATGCTTTG
GTGTGCATTTTAAAGAAGAATATATGTTCCTTCAGTACTGTCCCCTGTAAGATGCCATGT
GAAGAAGTTGTAGACATGTAGAAGAAAATGCTAAAGCTGCCAAATTTCTCTCGACCCCTT
AAACACAACCCATTTTTGCATGTGGGGTGAGACATTCCTATGAGAGCCGGCCATTTGAGA
AAGGTAATGAAGGAAGCCGCGGGGCTCTCCTGGACTGGGTCCTTGAAAGGACTGCAGTGC
TTCAGGAAGCCGGGTGCCCTAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAGCCCTATTTTAAGCATTAGGGATGATCATTTACTATAGAAATGCTGGGAACACAA
AGCCTCGATTAAAAAGGTCTATGATTTCATCCACTCTTTGAAACAAATGATTTCCCTCAG
GGGAAGGGAAAAAAGGTGATTTCATGAAATACGAAGCCATTTTACCATTTGCTTTATATA
TATGGATCCATGTTTCTGAGGAAAAGGACATTCTCAGGTGATGTATTTTTTCATGCTTTG
GTGTGCATTTTAAAGAAGAATATATGTTCCTTCAGTACTGTCCCCTGTAAGATGCCATGT
GAAGAAGTTGTAGACATGTAGAAGAAAATGCTAAAGCTGCCAAATTTCTCTCGACCCCTT
AAACACAACCCATTTTTGCATGTGGGGTGAGACATTCCTATGAGAGCCGGCCATTTGAGA
AAGGTAATGAAGGAAGCCGCGGGGCTCTCCTGGACTGGGTCCTTGAAAGGACTGCAGTGC
TTCAGGAAGCCGGGTGCCCTAAGA

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-398, gnl|bosTau2|chr9 (49813953-49814357)
               

               
               1-398, gnl|canFam2|chr1 (42517896-42518297)
               

               
               1-398, gnl|dasNov1|scaffold_37245 (7132-7467)
               

               
               1-398, gnl|hg17|chr6 (148912978-148913430)
               

               
               1-398, gnl|Hg17|chr6 (148913053-148913491)
               

               
               1-398, gnl|loxAfr1|scaffold_4410 (79721-80119)
               

               
               1-398, gnl|mm7|chr10 (8423809-8423403)
               

               
               1-398, gnl|Mm7|chr10 (8423738-8423344)
               

               
               1-398, gnl|monDom2|scaffold_0 (57705652-57705153)
               

               
               1-398, gnl|oryCun1|scaffold_174801 (3853-3432)
               

               
               1-398, gnl|panTro1|chr5 (152357172-152357619)
               

               
               1-398, gnl|rheMac2|chr5 (93728007-93728426)
               

               
               1-398, gnl|rn3|chr1 (3321588-3321223)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-398, gnl|bosTau2|chr9 (49813953-49814357)
               

               
               1-398, gnl|canFam2|chr1 (42517896-42518297)
               

               
               1-398, gnl|dasNov1|scaffold_37245 (7132-7467)
               

               
               1-398, gnl|hg17|chr6 (148912978-148913430)
               

               
               1-398, gnl|Hg17|chr6 (148913053-148913491)
               

               
               1-398, gnl|loxAfr1|scaffold_4410 (79721-80119)
               

               
               1-398, gnl|mm7|chr10 (8423809-8423403)
               

               
               1-398, gnl|Mm7|chr10 (8423738-8423344)
               

               
               1-398, gnl|monDom2|scaffold_0 (57705652-57705153)
               

               
               1-398, gnl|oryCun1|scaffold_174801 (3853-3432)
               

               
               1-398, gnl|panTro1|chr5 (152357172-152357619)
               

               
               1-398, gnl|rheMac2|chr5 (93728007-93728426)
               

               
               1-398, gnl|rn3|chr1 (3321588-3321223)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cut (0.169924)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	1-398, gnl\|bosTau2\|chr9 (49813953-49814357)
	1-398, gnl\|canFam2\|chr1 (42517896-42518297)
	1-398, gnl\|dasNov1\|scaffold_37245 (7132-7467)
	1-398, gnl\|hg17\|chr6 (148912978-148913430)
	1-398, gnl\|Hg17\|chr6 (148913053-148913491)
	1-398, gnl\|loxAfr1\|scaffold_4410 (79721-80119)
	1-398, gnl\|mm7\|chr10 (8423809-8423403)
	1-398, gnl\|Mm7\|chr10 (8423738-8423344)
	1-398, gnl\|monDom2\|scaffold_0 (57705652-57705153)
	1-398, gnl\|oryCun1\|scaffold_174801 (3853-3432)
	1-398, gnl\|panTro1\|chr5 (152357172-152357619)
	1-398, gnl\|rheMac2\|chr5 (93728007-93728426)
	1-398, gnl\|rn3\|chr1 (3321588-3321223)