Non-Coding RNA Search

Ss1.1-rcut11_e11.5

Sequence:


               
               TGTCTGCTGCTTCCAGGAGGCCGGGATGGAGACAGTAGTTCGAGGAATGCCCTTGGTGTA
CCCTCCTAAGCCGGAGCGACTCAACGCTTACGGTAATGGATGGTGGGACAGTGGAGGGGA
ATGAGTAGGCCAGAGGACGGCGGGACAGGAACCCCGGGGTACGGGGCGGAGGTCCAAGGC
TCCTGTCTATAACCCTGTCTCTATCTGTGTCTCCATCTCTTCCTGTCTCTGACCCTGTCT
CTCCCCATTCCTGGGACACGGCGTCTGGGTCTCCCGGGCTCGGGGTCCGCGGGCGCAGAG
CGGGAGGTAGTGGTGAACATGCTGAACTCGCTGTCACGGAACCAGCCGCTGCCGCAGATC
ACACCCCGCTGCGGATGCGCGGACCCCCTGCCCGGCCGTCTACCCTTCCAGGGTTATGAA
AGCGCTTGCTCGGGCCGCCACTACTGTCTACGGGGGATGGACTACTACGTCGCGGGACCA
CCCTGCACTGAACGCCGGCTGCGGCCTTTGTGCGCAGAGCAGCCGACTGTAAGGAGTGTA
TCGCCTTGCGAGCACCGGCCCGGAATGCATTGTGCTGTTTTAACTCCCCCGCAGTCATAC
TACCCTTGTCCCAACCTTAGATGGGACACAAGTCACTTCAAGAAGACTGGTGGCCCCCAG
AGAAACAACTATGTTGTCCACCCTGAGTTTGTGTCTGAGACCTATCCTGACTACCACTGC
TGGTAGACCCCAGACTGGCCGGGCTAAGGGGGCTGAGCAATAAATAAATTCTTCACCCTA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCTGCTGCTTCCAGGAGGCCGGGATGGAGACAGTAGTTCGAGGAATGCCCTTGGTGTA
CCCTCCTAAGCCGGAGCGACTCAACGCTTACGGTAATGGATGGTGGGACAGTGGAGGGGA
ATGAGTAGGCCAGAGGACGGCGGGACAGGAACCCCGGGGTACGGGGCGGAGGTCCAAGGC
TCCTGTCTATAACCCTGTCTCTATCTGTGTCTCCATCTCTTCCTGTCTCTGACCCTGTCT
CTCCCCATTCCTGGGACACGGCGTCTGGGTCTCCCGGGCTCGGGGTCCGCGGGCGCAGAG
CGGGAGGTAGTGGTGAACATGCTGAACTCGCTGTCACGGAACCAGCCGCTGCCGCAGATC
ACACCCCGCTGCGGATGCGCGGACCCCCTGCCCGGCCGTCTACCCTTCCAGGGTTATGAA
AGCGCTTGCTCGGGCCGCCACTACTGTCTACGGGGGATGGACTACTACGTCGCGGGACCA
CCCTGCACTGAACGCCGGCTGCGGCCTTTGTGCGCAGAGCAGCCGACTGTAAGGAGTGTA
TCGCCTTGCGAGCACCGGCCCGGAATGCATTGTGCTGTTTTAACTCCCCCGCAGTCATAC
TACCCTTGTCCCAACCTTAGATGGGACACAAGTCACTTCAAGAAGACTGGTGGCCCCCAG
AGAAACAACTATGTTGTCCACCCTGAGTTTGTGTCTGAGACCTATCCTGACTACCACTGC
TGGTAGACCCCAGACTGGCCGGGCTAAGGGGGCTGAGCAATAAATAAATTCTTCACCCTA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55633129|ref|XP_520543.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55633129|ref|XP_520543.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-534, gnl|bosTau2|chr8 (41161928-41161395)
               

               
               5-534, gnl|Hg17|chr9 (34371454-34370894)
               

               
               5-534, gnl|Mm7|chr4 (41646068-41645556)
               


               
               602-782, gnl|bosTau2|chr8 (41159318-41159138)
               

               
               602-782, gnl|Hg17|chr9 (34369197-34369017)
               

               
               602-782, gnl|Mm7|chr4 (41643649-41643474)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-534, gnl|bosTau2|chr8 (41161928-41161395)
               

               
               5-534, gnl|Hg17|chr9 (34371454-34370894)
               

               
               5-534, gnl|Mm7|chr4 (41646068-41645556)
               


               
               602-782, gnl|bosTau2|chr8 (41159318-41159138)
               

               
               602-782, gnl|Hg17|chr9 (34369197-34369017)
               

               
               602-782, gnl|Mm7|chr4 (41643649-41643474)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               fhi (0.169578)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               fhi (0.169578)

	5-534, gnl\|bosTau2\|chr8 (41161928-41161395)
	5-534, gnl\|Hg17\|chr9 (34371454-34370894)
	5-534, gnl\|Mm7\|chr4 (41646068-41645556)

	602-782, gnl\|bosTau2\|chr8 (41159318-41159138)
	602-782, gnl\|Hg17\|chr9 (34369197-34369017)
	602-782, gnl\|Mm7\|chr4 (41643649-41643474)