Non-Coding RNA Search

Ss1.1-rcut27_d5.5S

Sequence:


               
               AAATGCAATTTAAAAAAAAATCTACCAAAACAATTCAACGGCCTGATGAAGATTTTCCTG
CGCACGGCTGAGGGCACTCTATGGACAATGGCTGAGCCTTGAGTCTGTGGTCAGGAGGAG
CCTGCAGGCATAGGTTTCATGCTGCCACCGATGGATGTCAGCCTTGATGTGCCTAGCAAA
CATGCTTGTGGGAGGAGGACGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGCAATTTAAAAAAAAATCTACCAAAACAATTCAACGGCCTGATGAAGATTTTCCTG
CGCACGGCTGAGGGCACTCTATGGACAATGGCTGAGCCTTGAGTCTGTGGTCAGGAGGAG
CCTGCAGGCATAGGTTTCATGCTGCCACCGATGGATGTCAGCCTTGATGTGCCTAGCAAA
CATGCTTGTGGGAGGAGGACGATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               35-150, - strand, RNAz p=0.950703
               

               
               90-204, - strand, RNAz p=0.618635

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               35-150, - strand, RNAz p=0.950703
               

               
               90-204, - strand, RNAz p=0.618635

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               15-204, gnl|bosTau2|chr1 (34082438-34082250)
               

               
               15-204, gnl|canFam2|chr33 (21848038-21848464)
               

               
               15-204, gnl|dasNov1|scaffold_193 (184288-184700)
               

               
               15-204, gnl|echTel1|scaffold_293885 (210862-210429)
               

               
               15-204, gnl|galGal2|chr1 (76843738-76843333)
               

               
               15-204, gnl|hg17|chr3 (115825128-115825550)
               

               
               15-204, gnl|Hg17|chr3 (115825539-115825349)
               

               
               15-204, gnl|loxAfr1|scaffold_231 (86735-87176)
               

               
               15-204, gnl|mm7|chr16 (43127608-43127193)
               

               
               15-204, gnl|Mm7|chr16 (43127200-43127387)
               

               
               15-204, gnl|monDom2|scaffold_24 (9469219-9469686)
               

               
               15-204, gnl|oryCun1|scaffold_211141 (153174-152746)
               

               
               15-204, gnl|panTro1|chr2 (117536102-117536523)
               

               
               15-204, gnl|rheMac2|chr2 (34633780-34634195)
               

               
               15-204, gnl|rn3|chr11 (58978949-58979358)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-204, gnl|bosTau2|chr1 (34082438-34082250)
               

               
               15-204, gnl|canFam2|chr33 (21848038-21848464)
               

               
               15-204, gnl|dasNov1|scaffold_193 (184288-184700)
               

               
               15-204, gnl|echTel1|scaffold_293885 (210862-210429)
               

               
               15-204, gnl|galGal2|chr1 (76843738-76843333)
               

               
               15-204, gnl|hg17|chr3 (115825128-115825550)
               

               
               15-204, gnl|Hg17|chr3 (115825539-115825349)
               

               
               15-204, gnl|loxAfr1|scaffold_231 (86735-87176)
               

               
               15-204, gnl|mm7|chr16 (43127608-43127193)
               

               
               15-204, gnl|Mm7|chr16 (43127200-43127387)
               

               
               15-204, gnl|monDom2|scaffold_24 (9469219-9469686)
               

               
               15-204, gnl|oryCun1|scaffold_211141 (153174-152746)
               

               
               15-204, gnl|panTro1|chr2 (117536102-117536523)
               

               
               15-204, gnl|rheMac2|chr2 (34633780-34634195)
               

               
               15-204, gnl|rn3|chr11 (58978949-58979358)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.169924)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	35-150, - strand, RNAz p=0.950703
	90-204, - strand, RNAz p=0.618635

	15-204, gnl\|bosTau2\|chr1 (34082438-34082250)
	15-204, gnl\|canFam2\|chr33 (21848038-21848464)
	15-204, gnl\|dasNov1\|scaffold_193 (184288-184700)
	15-204, gnl\|echTel1\|scaffold_293885 (210862-210429)
	15-204, gnl\|galGal2\|chr1 (76843738-76843333)
	15-204, gnl\|hg17\|chr3 (115825128-115825550)
	15-204, gnl\|Hg17\|chr3 (115825539-115825349)
	15-204, gnl\|loxAfr1\|scaffold_231 (86735-87176)
	15-204, gnl\|mm7\|chr16 (43127608-43127193)
	15-204, gnl\|Mm7\|chr16 (43127200-43127387)
	15-204, gnl\|monDom2\|scaffold_24 (9469219-9469686)
	15-204, gnl\|oryCun1\|scaffold_211141 (153174-152746)
	15-204, gnl\|panTro1\|chr2 (117536102-117536523)
	15-204, gnl\|rheMac2\|chr2 (34633780-34634195)
	15-204, gnl\|rn3\|chr11 (58978949-58979358)