Ss1.1-rcut31_b12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAACAGAGCATGCGGGCCAACGTGATCGCTATGATAGAGACAGAGATCGTGAGCCTTA TTTTGATCGTCAAAGTAATGTCATGACAGATCATCGGGATTTCAAAAGGGATCGGGAGAC ACATAGAGATCGAGACCGGGATCGTGGTGTTGACTATGACCGGGATCGATTTGACAGAGA ACGCCGACCGCGAGATGATAGGACTCAGTCGTATCGAGACAAAAAAGAACATTCCTCATC CAGAAGAGGGGGATTTGATAGGCCATCCTATGATCGGAAGTCTGACCGACCAGCCTATGA AGGACCGTCCATGTTTGGAGGAGAACGAAGAACTTACCCAGAGGAGCGAATGCCCCTGCC AGCTCCTTCAATAAGCCACCAGCCACCTCCAGCTCCACGGGTTGAGAAGAAACCTGAATC TAAGAATGTAGATGATATTTTGAAACCACCTGGCCGAGAGAGCAGACCTGAGAGAATTGT TGTTATAATGAGAGGATTGCCTGGCAGTGGAAAGACACATGTGGCGAAACTTATTCGAGA TAAAGAGGTAGAATTTGGAGGACCTGCACCCAGGGTTCTAAGCCTGGATGATTACTTCAT CACTGAAGTGGAAAAAGAAGAGAAGGATCCAGATTCTGGAAAAAAAGTGAAAAAAAAGGT AATGGAATATGAATATGAAGCTGAGATGGAGGAAACTTACCGAACCAGCATGTTCAAAAC CTTCAAAAAGACTCTAGATGATGGCTTTTTCCCCTTCATCATCCTGGATGCCATCAATGA CAGAGTTCGACATTTTGACCAGTTTTGGAGTGCAGCAAAAACCAAGGGATTTGAGGTGTA TTTAGCTGAAATGAGTGCAGACAACCAGACTTGTGGCAAGAGGAATATTCATGGGAGGAA GCTCAAAGAAATAAATAAGATGGCCGATCACTGGGAAGCTGCACCTCGTCATATGATGCG TCTGGACATTCGTTCCTTGCTTCAAGATGCTGCTATTGAAGAGGTAGAGATGGAAGATTT TGATGCAAATATTGAAGAACAGAAGGATGAAAAGAAAGATGCAGAAGAAGAGGAAAGCGA ACTGGGTTACATTCCGAAAAGCAAATGGGAGATGGACACATCTGAGGCAAAGCTAGACAA GTTGGATGGCTTGAGAACTGGTACTAAAAGGAAACGTGACTGGGAGGCTATTGCCAGCAG AATGGAGGATTATCTTCAGCTCCCTGATGATTATGACACTCGTGCTTCTGAACCTGGGAA GAAGAGGGTGAGATGGGCAGACCTGGAAGAAAAGAAGGATGCAGATAGGAAAAGGGCCAT AGGTTTTGTGGTCGGACAGACTGATTGGGAGAAGATCACAGATGAAAGTGGTCACCTGGC TGAAAAAGCCCTCAATCGAACCAAATATATATGAGACTTAGTTTTTGAATGGAGTCATTA TTCCTCTAAGGCGGTTCCCCGTGAGGTGATCTGAAGCCAAGGCCTCATGGAGCTTCGTTG TGTGTCACCTTGCCTCCACGTTTCAGTTTTTGTTTTGTTTCTACTGCTTTAGTTTTTTTA AAGTTCTCCAGTGTCCCCAAGAGGTATTAGAATCTTGCTCTACCCAAGCAAGACATTAAT TTTCTTTTTAACTACTTTTGGGGAGGGAGGGAGTGATAGCATAACTGCTGAAGCCAGGTG GAGGTCTGCTGGAGGACTCCAACAGACAGCGTTTCCTCCACTGTACAGTGTCACAGACTA TCTCTATCATCATTGCTTCGTGGCTGTTTTTGTTTTTTACTGTATGTAACTGGTAGTTGA TTGTACTAGGATTAAAAAAAAAATAAACTTTCTTGATAAAGCCGATGAGATTCATGGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAACAGAGCATGCGGGCCAACGTGATCGCTATGATAGAGACAGAGATCGTGAGCCTTA TTTTGATCGTCAAAGTAATGTCATGACAGATCATCGGGATTTCAAAAGGGATCGGGAGAC ACATAGAGATCGAGACCGGGATCGTGGTGTTGACTATGACCGGGATCGATTTGACAGAGA ACGCCGACCGCGAGATGATAGGACTCAGTCGTATCGAGACAAAAAAGAACATTCCTCATC CAGAAGAGGGGGATTTGATAGGCCATCCTATGATCGGAAGTCTGACCGACCAGCCTATGA AGGACCGTCCATGTTTGGAGGAGAACGAAGAACTTACCCAGAGGAGCGAATGCCCCTGCC AGCTCCTTCAATAAGCCACCAGCCACCTCCAGCTCCACGGGTTGAGAAGAAACCTGAATC TAAGAATGTAGATGATATTTTGAAACCACCTGGCCGAGAGAGCAGACCTGAGAGAATTGT TGTTATAATGAGAGGATTGCCTGGCAGTGGAAAGACACATGTGGCGAAACTTATTCGAGA TAAAGAGGTAGAATTTGGAGGACCTGCACCCAGGGTTCTAAGCCTGGATGATTACTTCAT CACTGAAGTGGAAAAAGAAGAGAAGGATCCAGATTCTGGAAAAAAAGTGAAAAAAAAGGT AATGGAATATGAATATGAAGCTGAGATGGAGGAAACTTACCGAACCAGCATGTTCAAAAC CTTCAAAAAGACTCTAGATGATGGCTTTTTCCCCTTCATCATCCTGGATGCCATCAATGA CAGAGTTCGACATTTTGACCAGTTTTGGAGTGCAGCAAAAACCAAGGGATTTGAGGTGTA TTTAGCTGAAATGAGTGCAGACAACCAGACTTGTGGCAAGAGGAATATTCATGGGAGGAA GCTCAAAGAAATAAATAAGATGGCCGATCACTGGGAAGCTGCACCTCGTCATATGATGCG TCTGGACATTCGTTCCTTGCTTCAAGATGCTGCTATTGAAGAGGTAGAGATGGAAGATTT TGATGCAAATATTGAAGAACAGAAGGATGAAAAGAAAGATGCAGAAGAAGAGGAAAGCGA ACTGGGTTACATTCCGAAAAGCAAATGGGAGATGGACACATCTGAGGCAAAGCTAGACAA GTTGGATGGCTTGAGAACTGGTACTAAAAGGAAACGTGACTGGGAGGCTATTGCCAGCAG AATGGAGGATTATCTTCAGCTCCCTGATGATTATGACACTCGTGCTTCTGAACCTGGGAA GAAGAGGGTGAGATGGGCAGACCTGGAAGAAAAGAAGGATGCAGATAGGAAAAGGGCCAT AGGTTTTGTGGTCGGACAGACTGATTGGGAGAAGATCACAGATGAAAGTGGTCACCTGGC TGAAAAAGCCCTCAATCGAACCAAATATATATGAGACTTAGTTTTTGAATGGAGTCATTA TTCCTCTAAGGCGGTTCCCCGTGAGGTGATCTGAAGCCAAGGCCTCATGGAGCTTCGTTG TGTGTCACCTTGCCTCCACGTTTCAGTTTTTGTTTTGTTTCTACTGCTTTAGTTTTTTTA AAGTTCTCCAGTGTCCCCAAGAGGTATTAGAATCTTGCTCTACCCAAGCAAGACATTAAT TTTCTTTTTAACTACTTTTGGGGAGGGAGGGAGTGATAGCATAACTGCTGAAGCCAGGTG GAGGTCTGCTGGAGGACTCCAACAGACAGCGTTTCCTCCACTGTACAGTGTCACAGACTA TCTCTATCATCATTGCTTCGTGGCTGTTTTTGTTTTTTACTGTATGTAACTGGTAGTTGA TTGTACTAGGATTAAAAAAAAAATAAACTTTCTTGATAAAGCCGATGAGATTCATGGGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 696-1793, + strand, RNAz p=0.988124 | |
| 1640-1792, + strand, RNAz p=0.985815 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 696-1793, + strand, RNAz p=0.988124 | |
| 1640-1792, + strand, RNAz p=0.985815 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC023570, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 6-202, gnl|bosTau2|chr10 (56390705-56390904) | |
| 6-202, gnl|canFam2|chr8 (50960221-50960493) | |
| 6-202, gnl|danRer3|chr20 (9054576-9054339) | |
| 6-202, gnl|dasNov1|scaffold_8910 (53398-53125) | |
| 6-202, gnl|echTel1|scaffold_211837 (3612-3307) | |
| 6-202, gnl|galGal2|chr5 (34913636-34913891) | |
| 6-202, gnl|hg17|chr14 (74346625-74346894) | |
| 6-202, gnl|Hg17|chr14 (74346678-74346877) | |
| 6-202, gnl|mm7|chr12 (83041906-83042168) | |
| 6-202, gnl|Mm7|chr12 (83041957-83042150) | |
| 6-202, gnl|monDom2|scaffold_8 (59757291-59757021) | |
| 6-202, gnl|oryCun1|scaffold_214854 (37266-36996) | |
| 6-202, gnl|panTro1|chr15 (74349309-74349578) | |
| 6-202, gnl|rheMac2|chr7 (137921061-137921329) | |
| 6-202, gnl|rn3|chr6 (109092833-109093085) | |
| 6-202, gnl|xenTro1|scaffold_423 (370579-370317) | |
| 657-840, gnl|bosTau2|chr10 (56395730-56395913) | |
| 657-840, gnl|Hg17|chr14 (74353385-74353568) | |
| 657-840, gnl|Mm7|chr12 (83049528-83049711) | |
| 1135-1273, gnl|bosTau2|chr10 (56407132-56407270) | |
| 1135-1273, gnl|canFam2|chr8 (50980298-50980483) | |
| 1135-1273, gnl|danRer3|chr20 (9038681-9038529) | |
| 1135-1273, gnl|dasNov1|scaffold_8910 (38762-38577) | |
| 1135-1273, gnl|echTel1|scaffold_323847 (51735-51920) | |
| 1135-1273, gnl|fr1|chrUn (63250114-63250269) | |
| 1135-1273, gnl|galGal2|chr5 (34925877-34926060) | |
| 1135-1273, gnl|hg17|chr14 (74365635-74365820) | |
| 1135-1273, gnl|Hg17|chr14 (74365667-74365805) | |
| 1135-1273, gnl|loxAfr1|scaffold_1664 (16603-16788) | |
| 1135-1273, gnl|mm7|chr12 (83064777-83064961) | |
| 1135-1273, gnl|Mm7|chr12 (83064807-83064945) | |
| 1135-1273, gnl|monDom2|scaffold_8 (59740455-59740270) | |
| 1135-1273, gnl|oryCun1|scaffold_214854 (17739-17554) | |
| 1135-1273, gnl|panTro1|chr15 (74368401-74368586) | |
| 1135-1273, gnl|rheMac2|chr7 (137940381-137940566) | |
| 1135-1273, gnl|rn3|chr6 (109115811-109115995) | |
| 1135-1273, gnl|tetNig1|chr14 (5284513-5284380) | |
| 1135-1273, gnl|xenTro1|scaffold_423 (346552-346376) | |
| 1449-1860, gnl|bosTau2|chr10 (56437878-56438286) | |
| 1449-1860, gnl|canFam2|chr8 (50993353-50993840) | |
| 1449-1860, gnl|dasNov1|scaffold_8910 (32677-32184) | |
| 1449-1860, gnl|echTel1|scaffold_316552 (83481-83936) | |
| 1449-1860, gnl|galGal2|chr5 (34928707-34929231) | |
| 1449-1860, gnl|hg17|chr14 (74372015-74372502) | |
| 1449-1860, gnl|Hg17|chr14 (74372229-74372638) | |
| 1449-1860, gnl|loxAfr1|scaffold_1664 (24073-24545) | |
| 1449-1860, gnl|mm7|chr12 (83069727-83070214) | |
| 1449-1860, gnl|Mm7|chr12 (83069941-83070345) | |
| 1449-1860, gnl|monDom2|scaffold_8 (59736567-59736032) | |
| 1449-1860, gnl|oryCun1|scaffold_214854 (9556-9073) | |
| 1449-1860, gnl|panTro1|chr15 (74374784-74375271) | |
| 1449-1860, gnl|rheMac2|chr7 (137946935-137947422) | |
| 1449-1860, gnl|rn3|chr6 (109120589-109121071) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-202, gnl|bosTau2|chr10 (56390705-56390904) | |
| 6-202, gnl|canFam2|chr8 (50960221-50960493) | |
| 6-202, gnl|danRer3|chr20 (9054576-9054339) | |
| 6-202, gnl|dasNov1|scaffold_8910 (53398-53125) | |
| 6-202, gnl|echTel1|scaffold_211837 (3612-3307) | |
| 6-202, gnl|galGal2|chr5 (34913636-34913891) | |
| 6-202, gnl|hg17|chr14 (74346625-74346894) | |
| 6-202, gnl|Hg17|chr14 (74346678-74346877) | |
| 6-202, gnl|mm7|chr12 (83041906-83042168) | |
| 6-202, gnl|Mm7|chr12 (83041957-83042150) | |
| 6-202, gnl|monDom2|scaffold_8 (59757291-59757021) | |
| 6-202, gnl|oryCun1|scaffold_214854 (37266-36996) | |
| 6-202, gnl|panTro1|chr15 (74349309-74349578) | |
| 6-202, gnl|rheMac2|chr7 (137921061-137921329) | |
| 6-202, gnl|rn3|chr6 (109092833-109093085) | |
| 6-202, gnl|xenTro1|scaffold_423 (370579-370317) | |
| 657-840, gnl|bosTau2|chr10 (56395730-56395913) | |
| 657-840, gnl|Hg17|chr14 (74353385-74353568) | |
| 657-840, gnl|Mm7|chr12 (83049528-83049711) | |
| 1135-1273, gnl|bosTau2|chr10 (56407132-56407270) | |
| 1135-1273, gnl|canFam2|chr8 (50980298-50980483) | |
| 1135-1273, gnl|danRer3|chr20 (9038681-9038529) | |
| 1135-1273, gnl|dasNov1|scaffold_8910 (38762-38577) | |
| 1135-1273, gnl|echTel1|scaffold_323847 (51735-51920) | |
| 1135-1273, gnl|fr1|chrUn (63250114-63250269) | |
| 1135-1273, gnl|galGal2|chr5 (34925877-34926060) | |
| 1135-1273, gnl|hg17|chr14 (74365635-74365820) | |
| 1135-1273, gnl|Hg17|chr14 (74365667-74365805) | |
| 1135-1273, gnl|loxAfr1|scaffold_1664 (16603-16788) | |
| 1135-1273, gnl|mm7|chr12 (83064777-83064961) | |
| 1135-1273, gnl|Mm7|chr12 (83064807-83064945) | |
| 1135-1273, gnl|monDom2|scaffold_8 (59740455-59740270) | |
| 1135-1273, gnl|oryCun1|scaffold_214854 (17739-17554) | |
| 1135-1273, gnl|panTro1|chr15 (74368401-74368586) | |
| 1135-1273, gnl|rheMac2|chr7 (137940381-137940566) | |
| 1135-1273, gnl|rn3|chr6 (109115811-109115995) | |
| 1135-1273, gnl|tetNig1|chr14 (5284513-5284380) | |
| 1135-1273, gnl|xenTro1|scaffold_423 (346552-346376) | |
| 1449-1860, gnl|bosTau2|chr10 (56437878-56438286) | |
| 1449-1860, gnl|canFam2|chr8 (50993353-50993840) | |
| 1449-1860, gnl|dasNov1|scaffold_8910 (32677-32184) | |
| 1449-1860, gnl|echTel1|scaffold_316552 (83481-83936) | |
| 1449-1860, gnl|galGal2|chr5 (34928707-34929231) | |
| 1449-1860, gnl|hg17|chr14 (74372015-74372502) | |
| 1449-1860, gnl|Hg17|chr14 (74372229-74372638) | |
| 1449-1860, gnl|loxAfr1|scaffold_1664 (24073-24545) | |
| 1449-1860, gnl|mm7|chr12 (83069727-83070214) | |
| 1449-1860, gnl|Mm7|chr12 (83069941-83070345) | |
| 1449-1860, gnl|monDom2|scaffold_8 (59736567-59736032) | |
| 1449-1860, gnl|oryCun1|scaffold_214854 (9556-9073) | |
| 1449-1860, gnl|panTro1|chr15 (74374784-74375271) | |
| 1449-1860, gnl|rheMac2|chr7 (137946935-137947422) | |
| 1449-1860, gnl|rn3|chr6 (109120589-109121071) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| elu (0.385356) | |
| cut (0.339847) | |
| lnt (0.284616) | |
| hea (0.204499) | |
| sto (0.179824) | |
| cje (0.165235) | |
| cag (0.151194) | |
| isp (0.150376) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cbr (0.127975) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cut (0.339847) | |
| lnt (0.284616) | |
| hea (0.204499) | |
| sto (0.179824) | |
| cje (0.165235) | |
| cag (0.151194) | |
| isp (0.150376) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cbr (0.127975) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) | |
| jej (0.0989218) |