Ss1.1-rcut31_n20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCAGCTGGTGCGATTTGCTGCTGTCGCTTTTGGCGTTCGGCCATCCAGAAACAAACCAG TTCGATGACTACTAATAGTTATAGCCAGATGTACTAATACACAACAAATCACAGTCCTGC AGAGGGGCGCGCAAATGAGTTCCTATTTTGTGAATCCCACTTTCCCCGGGAGCCTGCCCA GCGGCCAGGACTCCTTCTTGGGCCAGCTGCCCCTCTACCCGGCCGGCTATGACGCGCTGA GGCCCTTCCCGGCCTCGTACGGGGCGTCGAGCCTCCCGGACAAGACGTACACCTCACCTT GTTTCTACCAACAGTCCAACTCGGTCCTGGCCTGCAACCGGGCGTCCTACGAGTACGGGG CCTCGTGTTTCTATTCTGATAAGGACCTCAGTGGCGCCTCGCCCTCGGGCAGTGGCAAGC AGAGGGGCCCCGGGGACTACCTGCACTTTTCTCCCGAGCAGCAGTTCAAACCCGACAGCA GCAGCGGGCCGGGCAAAGGCCTCCATGACGAAGGCACCGACCGGAAGTACACGAGCCCCG TTTACCCCTGGATGCAGCGGATGAACTCCTGCGCGGGTAAGGTGTTTCCTTGCAGCCCCT CATGAGAGCAGAGGGAGAGGGGGAACGAGGCAGGGAAAGAAGGAAGGAAGGAAGGAGGAG GCAGAGTAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCAGCTGGTGCGATTTGCTGCTGTCGCTTTTGGCGTTCGGCCATCCAGAAACAAACCAG TTCGATGACTACTAATAGTTATAGCCAGATGTACTAATACACAACAAATCACAGTCCTGC AGAGGGGCGCGCAAATGAGTTCCTATTTTGTGAATCCCACTTTCCCCGGGAGCCTGCCCA GCGGCCAGGACTCCTTCTTGGGCCAGCTGCCCCTCTACCCGGCCGGCTATGACGCGCTGA GGCCCTTCCCGGCCTCGTACGGGGCGTCGAGCCTCCCGGACAAGACGTACACCTCACCTT GTTTCTACCAACAGTCCAACTCGGTCCTGGCCTGCAACCGGGCGTCCTACGAGTACGGGG CCTCGTGTTTCTATTCTGATAAGGACCTCAGTGGCGCCTCGCCCTCGGGCAGTGGCAAGC AGAGGGGCCCCGGGGACTACCTGCACTTTTCTCCCGAGCAGCAGTTCAAACCCGACAGCA GCAGCGGGCCGGGCAAAGGCCTCCATGACGAAGGCACCGACCGGAAGTACACGAGCCCCG TTTACCCCTGGATGCAGCGGATGAACTCCTGCGCGGGTAAGGTGTTTCCTTGCAGCCCCT CATGAGAGCAGAGGGAGAGGGGGAACGAGGCAGGGAAAGAAGGAAGGAAGGAAGGAGGAG GCAGAGTAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 160-319, - strand, RNAz p=0.644736 | |
| 560-657, + strand, RNAz p=1 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-319, - strand, RNAz p=0.644736 | |
| 560-657, + strand, RNAz p=1 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-657, gnl|bosTau2|chr4 (37106782-37107438) | |
| 1-657, gnl|Hg17|chr7 (26960742-26960098) | |
| 1-657, gnl|Mm7|chr6 (52172127-52171412) | |
| 134-284, gnl|bosTau2|chr19 (31215873-31215720) | |
| 134-284, gnl|canFam2|chr9 (28187310-28187524) | |
| 134-284, gnl|danRer3|chr12 (26533125-26532922) | |
| 134-284, gnl|dasNov1|scaffold_279684 (3695-3909) | |
| 134-284, gnl|echTel1|scaffold_317669 (222259-222045) | |
| 134-284, gnl|fr1|chrUn (164006928-164006670) | |
| 134-284, gnl|galGal2|chr2 (31804405-31804607) | |
| 134-284, gnl|hg17|chr17 (44030312-44030526) | |
| 134-284, gnl|Hg17|chr17 (44030512-44030359) | |
| 134-284, gnl|loxAfr1|scaffold_8696 (28144-28358) | |
| 134-284, gnl|mm7|chr11 (96408417-96408203) | |
| 134-284, gnl|Mm7|chr11 (96408215-96408368) | |
| 134-284, gnl|monDom2|scaffold_18 (45600998-45600784) | |
| 134-284, gnl|oryCun1|scaffold_195592 (2627-2413) | |
| 134-284, gnl|panTro1|chr19_random (42979283-42979497) | |
| 134-284, gnl|rheMac2|chr16 (32827651-32827865) | |
| 134-284, gnl|rn3|chr10 (85045771-85045557) | |
| 134-284, gnl|tetNig1|chrUn_random (38109656-38109901) | |
| 134-284, gnl|xenTro1|scaffold_329 (562610-562819) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-657, gnl|bosTau2|chr4 (37106782-37107438) | |
| 1-657, gnl|Hg17|chr7 (26960742-26960098) | |
| 1-657, gnl|Mm7|chr6 (52172127-52171412) | |
| 134-284, gnl|bosTau2|chr19 (31215873-31215720) | |
| 134-284, gnl|canFam2|chr9 (28187310-28187524) | |
| 134-284, gnl|danRer3|chr12 (26533125-26532922) | |
| 134-284, gnl|dasNov1|scaffold_279684 (3695-3909) | |
| 134-284, gnl|echTel1|scaffold_317669 (222259-222045) | |
| 134-284, gnl|fr1|chrUn (164006928-164006670) | |
| 134-284, gnl|galGal2|chr2 (31804405-31804607) | |
| 134-284, gnl|hg17|chr17 (44030312-44030526) | |
| 134-284, gnl|Hg17|chr17 (44030512-44030359) | |
| 134-284, gnl|loxAfr1|scaffold_8696 (28144-28358) | |
| 134-284, gnl|mm7|chr11 (96408417-96408203) | |
| 134-284, gnl|Mm7|chr11 (96408215-96408368) | |
| 134-284, gnl|monDom2|scaffold_18 (45600998-45600784) | |
| 134-284, gnl|oryCun1|scaffold_195592 (2627-2413) | |
| 134-284, gnl|panTro1|chr19_random (42979283-42979497) | |
| 134-284, gnl|rheMac2|chr16 (32827651-32827865) | |
| 134-284, gnl|rn3|chr10 (85045771-85045557) | |
| 134-284, gnl|tetNig1|chrUn_random (38109656-38109901) | |
| 134-284, gnl|xenTro1|scaffold_329 (562610-562819) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| cki (0.165235) |