Non-Coding RNA Search

Ss1.1-rcut32_o13.5

Sequence:


               
               CCTAGACTGTTACTTTGGCAATTTCCTGGCCCTCCACCCCGCGTTGCCCGCCATCGGGCT
CAGCATCACACGCCTCTGCCGCAAATCTGCGATGGCTCTGGGACCCTTCTGCCGTCGTCC
CCTGTGGTCTGTTCACATTTCTGAGGATCTTCCGCGTTCGGAGTGCCGCGGGGGGAGCTG
CGTGTGGTCAGGATGTGGGAATTAGCGTTGTCAGATCCACTCTATGAGTTGGACTGCCGT
CTTGCCTAGGCGATTGTGTCTACCGTTTGTATTTTGAAAGCGCAAGGTGCTGATGTCAAG
ATGCCACAGATATCAGTGTGTCCTTGTGTCCTCTCCCTGCCCCATCTCGGAAGAGCTCTC
CTGTGGCTCTCCTGGCTCCTCACCCGCTCTGGGCCCAGGCCCGCCGACACGCTCCTTCCG
TCAAGACGTCTCTCTTACTCCTGCCATTCTTCTGGTGCTACTCCACACAGGGGTTAGTGC
AGCCCAGGACACTCTAGAGAAGGTATCAGCAGAGAAGAAGGCTGAGGAGGAGCAGGAAAC
ATGGGAGCTGACTGATTTCGGTAATTGATAACCTACCAATTGCCACAGAAAAGGTGGGAG
GTGAGTCGGGCTTCTGCGCAAACCCCCTCTCCTCACCAGAACTGCAAAGGTATGCTGTCA
TGGCCCCTTCTGGAAGTTTCTGGTGCCATTACTGAACTGTTACAACCTGTATTTCCAAAC
CTGGTTCATATTTATACTTTGCAATTCAAATAAAGATAACCCTACACCAGAAAAAAACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAGACTGTTACTTTGGCAATTTCCTGGCCCTCCACCCCGCGTTGCCCGCCATCGGGCT
CAGCATCACACGCCTCTGCCGCAAATCTGCGATGGCTCTGGGACCCTTCTGCCGTCGTCC
CCTGTGGTCTGTTCACATTTCTGAGGATCTTCCGCGTTCGGAGTGCCGCGGGGGGAGCTG
CGTGTGGTCAGGATGTGGGAATTAGCGTTGTCAGATCCACTCTATGAGTTGGACTGCCGT
CTTGCCTAGGCGATTGTGTCTACCGTTTGTATTTTGAAAGCGCAAGGTGCTGATGTCAAG
ATGCCACAGATATCAGTGTGTCCTTGTGTCCTCTCCCTGCCCCATCTCGGAAGAGCTCTC
CTGTGGCTCTCCTGGCTCCTCACCCGCTCTGGGCCCAGGCCCGCCGACACGCTCCTTCCG
TCAAGACGTCTCTCTTACTCCTGCCATTCTTCTGGTGCTACTCCACACAGGGGTTAGTGC
AGCCCAGGACACTCTAGAGAAGGTATCAGCAGAGAAGAAGGCTGAGGAGGAGCAGGAAAC
ATGGGAGCTGACTGATTTCGGTAATTGATAACCTACCAATTGCCACAGAAAAGGTGGGAG
GTGAGTCGGGCTTCTGCGCAAACCCCCTCTCCTCACCAGAACTGCAAAGGTATGCTGTCA
TGGCCCCTTCTGGAAGTTTCTGGTGCCATTACTGAACTGTTACAACCTGTATTTCCAAAC
CTGGTTCATATTTATACTTTGCAATTCAAATAAAGATAACCCTACACCAGAAAAAAACCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               547-642, - strand, RNAz p=0.984593

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               547-642, - strand, RNAz p=0.984593

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-723, gnl|bosTau2|chr7 (30809068-30809808)
               

               
               1-723, gnl|canFam2|chr2 (38400976-38402036)
               

               
               1-723, gnl|dasNov1|scaffold_2805 (106957-105945)
               

               
               1-723, gnl|echTel1|scaffold_277716 (36995-38067)
               

               
               1-723, gnl|hg17|chr5 (139692594-139693654)
               

               
               1-723, gnl|Hg17|chr5 (139693397-139692681)
               

               
               1-723, gnl|loxAfr1|scaffold_2366 (98031-99088)
               

               
               1-723, gnl|mm7|chr18 (36881171-36882209)
               

               
               1-723, gnl|Mm7|chr18 (36881929-36881224)
               

               
               1-723, gnl|monDom2|scaffold_6 (68434006-68432887)
               

               
               1-723, gnl|oryCun1|scaffold_213222 (95751-94741)
               

               
               1-723, gnl|panTro1|chr4 (146309834-146310891)
               

               
               1-723, gnl|rheMac2|chr6 (136750997-136752054)
               

               
               1-723, gnl|rn3|chr18 (29169690-29170706)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-723, gnl|bosTau2|chr7 (30809068-30809808)
               

               
               1-723, gnl|canFam2|chr2 (38400976-38402036)
               

               
               1-723, gnl|dasNov1|scaffold_2805 (106957-105945)
               

               
               1-723, gnl|echTel1|scaffold_277716 (36995-38067)
               

               
               1-723, gnl|hg17|chr5 (139692594-139693654)
               

               
               1-723, gnl|Hg17|chr5 (139693397-139692681)
               

               
               1-723, gnl|loxAfr1|scaffold_2366 (98031-99088)
               

               
               1-723, gnl|mm7|chr18 (36881171-36882209)
               

               
               1-723, gnl|Mm7|chr18 (36881929-36881224)
               

               
               1-723, gnl|monDom2|scaffold_6 (68434006-68432887)
               

               
               1-723, gnl|oryCun1|scaffold_213222 (95751-94741)
               

               
               1-723, gnl|panTro1|chr4 (146309834-146310891)
               

               
               1-723, gnl|rheMac2|chr6 (136750997-136752054)
               

               
               1-723, gnl|rn3|chr18 (29169690-29170706)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               nca (0.136874)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               nca (0.136874)
               

               
               jca (0.11396)

	1-723, gnl\|bosTau2\|chr7 (30809068-30809808)
	1-723, gnl\|canFam2\|chr2 (38400976-38402036)
	1-723, gnl\|dasNov1\|scaffold_2805 (106957-105945)
	1-723, gnl\|echTel1\|scaffold_277716 (36995-38067)
	1-723, gnl\|hg17\|chr5 (139692594-139693654)
	1-723, gnl\|Hg17\|chr5 (139693397-139692681)
	1-723, gnl\|loxAfr1\|scaffold_2366 (98031-99088)
	1-723, gnl\|mm7\|chr18 (36881171-36882209)
	1-723, gnl\|Mm7\|chr18 (36881929-36881224)
	1-723, gnl\|monDom2\|scaffold_6 (68434006-68432887)
	1-723, gnl\|oryCun1\|scaffold_213222 (95751-94741)
	1-723, gnl\|panTro1\|chr4 (146309834-146310891)
	1-723, gnl\|rheMac2\|chr6 (136750997-136752054)
	1-723, gnl\|rn3\|chr18 (29169690-29170706)