Non-Coding RNA Search

Ss1.1-rcut34_e22.5

Sequence:


               
               GCAGGCTCAGCCCAGCAAGGCGTTTCGTATGACCTCGCTCCGCTTTCAGGTGGTGTCAGG
TGCATTGAACACCTGACAGGAAGGAAATGAGAGGTTTTCTTCCTGAGGTGCCTGCGTTTG
GCTGGGGACCCAGTGATATCTGCAGCCTGTCTGTCTAAAGGATGTTCAGTGAACAGATCT
GCTTGGGAATTTATATCCAGCTGAGTACTTTAAAAAATATATTAGGTTTTTAGTTTTTTC
CTCAAAGAACACCTCTGATATTGAGTTCTCTTTGTTTTTTAAAAAAGATTCTGAAAAGAA
AGTGTTCATATTATCAAAACTAGAATTCTGTCAACTTTTAAGATAGCAAAAGTCATTCTT
TTAGGCAAAGAAAAGGGCAAAAACTAGTATTAAAATATGTCATGTTAAAAGTAATGGAAA
TCGTGATAGTTTGAAAGGAAACCCATTTCAGTTAGTCATGTTAAATTTGTAACAATTTGA
GGCTAGTGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCTCAGCCCAGCAAGGCGTTTCGTATGACCTCGCTCCGCTTTCAGGTGGTGTCAGG
TGCATTGAACACCTGACAGGAAGGAAATGAGAGGTTTTCTTCCTGAGGTGCCTGCGTTTG
GCTGGGGACCCAGTGATATCTGCAGCCTGTCTGTCTAAAGGATGTTCAGTGAACAGATCT
GCTTGGGAATTTATATCCAGCTGAGTACTTTAAAAAATATATTAGGTTTTTAGTTTTTTC
CTCAAAGAACACCTCTGATATTGAGTTCTCTTTGTTTTTTAAAAAAGATTCTGAAAAGAA
AGTGTTCATATTATCAAAACTAGAATTCTGTCAACTTTTAAGATAGCAAAAGTCATTCTT
TTAGGCAAAGAAAAGGGCAAAAACTAGTATTAAAATATGTCATGTTAAAAGTAATGGAAA
TCGTGATAGTTTGAAAGGAAACCCATTTCAGTTAGTCATGTTAAATTTGTAACAATTTGA
GGCTAGTGAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               37-149, + strand, RNAz p=0.561543

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-149, + strand, RNAz p=0.561543

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB033055, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB033055, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               37-351, gnl|bosTau2|chr3 (42172946-42172634)
               

               
               37-351, gnl|Hg17|chr1 (86527262-86526954)
               

               
               37-351, gnl|Mm7|chr3 (145047063-145047323)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-351, gnl|bosTau2|chr3 (42172946-42172634)
               

               
               37-351, gnl|Hg17|chr1 (86527262-86526954)
               

               
               37-351, gnl|Mm7|chr3 (145047063-145047323)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cut (0.339847)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.339847)

	37-351, gnl\|bosTau2\|chr3 (42172946-42172634)
	37-351, gnl\|Hg17\|chr1 (86527262-86526954)
	37-351, gnl\|Mm7\|chr3 (145047063-145047323)