Non-Coding RNA Search

Ss1.1-rcut34_n21.5.5

Sequence:


               
               CTGAACAATTTAAAGGTAACAGTCCCGTTGCTGGAAAGGGAAAGCTGATGGCCAAGACAC
ATTCCAGGTGACCTGAATCCAGGTGTCCCCACCCTGCAGTAGGCATTCCTTGAGGGGAAT
CATTTGAAGTTTTTGAGTCTCTGACAGTCAATTTCCTGGAAGCATTTACTTTCTCATCAG
GAAATCTGCAGAGTCAGGCTGAAGAATGAGCCATCTTGGGTCTGTGCAAGGAGGAAGAGA
ATCCATAAGGGAGAAGCTGTGGGAATATTTTTAAGAAAATAAAATTTTCCCGGATTTACT
GGGACCCAGTTGCATTCCAGGCACTGAAAAATACAGAATCCCTGTCCTCCCAGAGAAACT
CACAGACTAGAGAGGGAGACTGACAAGTAAAGATGCAATTTGGGAGTTCTCATTGTGGCT
CAGTGGAAAAGAATCCAACTAAGAACCATGAGGTTGTGGGTTCGATCCCTGACCTTGCTC
AGTAGGTTAAGGATCCAGCATTGCTGTGAGCTGTGGTGTAGGTCGAAGACCCGGCTTGGA
TCTGGCATTGCTGTGGCTGTGGCGTAGGCCAGCAGCCTTAGCTCCGATTTGAACCCTAGC
CTGGGAACCTCCATATGCCACTGGTGCAGCCCTAAAAAGCAAAAGAAAAAAAAAAAGAAA
AGAAAAGACACAATTTGAATCCAAGCTTAGGGATGCAAAGGTGGAGGCATGTGAAGGGAG
CTGTGGGAGCTTTGAGAAGGTTTCCACCCCTGCAAGGCACAGGTACCTACAGGGTTGTAC
ATGCACGCCTTGGTGTGTTCCAGCTTCATGGGGTCAGGAACCTCCTGCAGTTTGTTGTTT
TGTTTTGTTTTTCTCATGTTGGCTATTAAAATCAGAACAGCCTCAGAATTATCATCCTGC
AATTGCTCTTAGCTCACATACCATTTGTAATTGACGAATGTTTTGGGAAATGAATAGAAA
ATGAAGCCAGTTGATTACATTTTTGCATTTTCAGCATGAATATAAAATATTAATTTCCCC
GAGCACTTGAGACTCTTTAATGCTTTATAGTAAAGGCTACAAAAAGTCAGAGAAAACTGC
ATATGTATAATTTTCATTTTACTAAATAAACATGACCTCAAATTTTGGAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAACAATTTAAAGGTAACAGTCCCGTTGCTGGAAAGGGAAAGCTGATGGCCAAGACAC
ATTCCAGGTGACCTGAATCCAGGTGTCCCCACCCTGCAGTAGGCATTCCTTGAGGGGAAT
CATTTGAAGTTTTTGAGTCTCTGACAGTCAATTTCCTGGAAGCATTTACTTTCTCATCAG
GAAATCTGCAGAGTCAGGCTGAAGAATGAGCCATCTTGGGTCTGTGCAAGGAGGAAGAGA
ATCCATAAGGGAGAAGCTGTGGGAATATTTTTAAGAAAATAAAATTTTCCCGGATTTACT
GGGACCCAGTTGCATTCCAGGCACTGAAAAATACAGAATCCCTGTCCTCCCAGAGAAACT
CACAGACTAGAGAGGGAGACTGACAAGTAAAGATGCAATTTGGGAGTTCTCATTGTGGCT
CAGTGGAAAAGAATCCAACTAAGAACCATGAGGTTGTGGGTTCGATCCCTGACCTTGCTC
AGTAGGTTAAGGATCCAGCATTGCTGTGAGCTGTGGTGTAGGTCGAAGACCCGGCTTGGA
TCTGGCATTGCTGTGGCTGTGGCGTAGGCCAGCAGCCTTAGCTCCGATTTGAACCCTAGC
CTGGGAACCTCCATATGCCACTGGTGCAGCCCTAAAAAGCAAAAGAAAAAAAAAAAGAAA
AGAAAAGACACAATTTGAATCCAAGCTTAGGGATGCAAAGGTGGAGGCATGTGAAGGGAG
CTGTGGGAGCTTTGAGAAGGTTTCCACCCCTGCAAGGCACAGGTACCTACAGGGTTGTAC
ATGCACGCCTTGGTGTGTTCCAGCTTCATGGGGTCAGGAACCTCCTGCAGTTTGTTGTTT
TGTTTTGTTTTTCTCATGTTGGCTATTAAAATCAGAACAGCCTCAGAATTATCATCCTGC
AATTGCTCTTAGCTCACATACCATTTGTAATTGACGAATGTTTTGGGAAATGAATAGAAA
ATGAAGCCAGTTGATTACATTTTTGCATTTTCAGCATGAATATAAAATATTAATTTCCCC
GAGCACTTGAGACTCTTTAATGCTTTATAGTAAAGGCTACAAAAAGTCAGAGAAAACTGC
ATATGTATAATTTTCATTTTACTAAATAAACATGACCTCAAATTTTGGAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               660-766, - strand, RNAz p=0.553141
               

               
               914-1033, - strand, RNAz p=0.705678

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               660-766, - strand, RNAz p=0.553141
               

               
               914-1033, - strand, RNAz p=0.705678

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-394, gnl|bosTau2|chr1 (44622525-44622126)
               

               
               1-394, gnl|Hg17|chr3_random (528750-528327)
               

               
               1-394, gnl|Mm7|chr16 (30971467-30970937)
               


               
               657-1122, gnl|bosTau2|chr1 (44622138-44621669)
               

               
               657-1122, gnl|Hg17|chr3_random (528339-527579)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-394, gnl|bosTau2|chr1 (44622525-44622126)
               

               
               1-394, gnl|Hg17|chr3_random (528750-528327)
               

               
               1-394, gnl|Mm7|chr16 (30971467-30970937)
               


               
               657-1122, gnl|bosTau2|chr1 (44622138-44621669)
               

               
               657-1122, gnl|Hg17|chr3_random (528339-527579)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               spc (5.10146)
               

               
               cut (1.01954)
               

               
               cbe (0.956938)
               

               
               fhi (0.678311)
               

               
               fat (0.58971)
               

               
               fbs (0.526039)
               

               
               pro (0.512033)
               

               
               ova (0.387397)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (5.10146)
               

               
               cut (1.01954)
               

               
               cbe (0.956938)
               

               
               fhi (0.678311)
               

               
               fat (0.58971)
               

               
               fbs (0.526039)
               

               
               pro (0.512033)
               

               
               ova (0.387397)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               ret (0.257467)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               rec (0.17307)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	660-766, - strand, RNAz p=0.553141
	914-1033, - strand, RNAz p=0.705678

	1-394, gnl\|bosTau2\|chr1 (44622525-44622126)
	1-394, gnl\|Hg17\|chr3_random (528750-528327)
	1-394, gnl\|Mm7\|chr16 (30971467-30970937)

	657-1122, gnl\|bosTau2\|chr1 (44622138-44621669)
	657-1122, gnl\|Hg17\|chr3_random (528339-527579)

	spc (5.10146)
	cut (1.01954)
	cbe (0.956938)
	fhi (0.678311)
	fat (0.58971)
	fbs (0.526039)
	pro (0.512033)
	ova (0.387397)
	ski (0.29347)
	hyp (0.285673)
	ret (0.257467)
	aor (0.195274)
	cmu (0.186393)
	sag (0.182715)
	rec (0.17307)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	nmm (0.132802)
	cov (0.132153)
	tra (0.123092)
	ldo (0.0970026)