Non-Coding RNA Search

Ss1.1-rcut36_a1.5

Sequence:


               
               GGCCACTGTGAGAAGAACCGAGGGCAGGACAAGGCTGCTGGCGCCGCGCCGGGAGCTCGG
GCGCAAGCTCCGCTTTTCATTCCGCAGCCCCGCCGGGCCCTGGTCTGGGCGAGGGGAAGG
GGCCCTGGTCCTGGTAGCCCTGAAAGCTTCTTCTGGAACCGCCGTCACCTTAGTCAGGAG
AGCAGAAAGTGCAATATTTCCTTTTACCTGGTGGGAGGGAGGGAAAGGGGCTTTATTTCT
GAGAGAAAAATATATAAACAGATCTTCTACATTTATATTTTTAACTTTCTGTTAACAAAC
ACTCCACTATTGCCTTGCCTTTTGAGCTCTTGCTACAGTCGCCTTTGCTACTGCTTAAAA
AGAGAATTTACAGGTATTGATAAAGAACAAGACTGTTTTATTAAAAGCTTTATTCAACTT
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCACTGTGAGAAGAACCGAGGGCAGGACAAGGCTGCTGGCGCCGCGCCGGGAGCTCGG
GCGCAAGCTCCGCTTTTCATTCCGCAGCCCCGCCGGGCCCTGGTCTGGGCGAGGGGAAGG
GGCCCTGGTCCTGGTAGCCCTGAAAGCTTCTTCTGGAACCGCCGTCACCTTAGTCAGGAG
AGCAGAAAGTGCAATATTTCCTTTTACCTGGTGGGAGGGAGGGAAAGGGGCTTTATTTCT
GAGAGAAAAATATATAAACAGATCTTCTACATTTATATTTTTAACTTTCTGTTAACAAAC
ACTCCACTATTGCCTTGCCTTTTGAGCTCTTGCTACAGTCGCCTTTGCTACTGCTTAAAA
AGAGAATTTACAGGTATTGATAAAGAACAAGACTGTTTTATTAAAAGCTTTATTCAACTT
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               65-423, gnl|bosTau2|chr11 (53550142-53549776)
               

               
               65-423, gnl|Hg17|chr2 (24954041-24953690)
               

               
               65-423, gnl|Mm7|chr12 (4132773-4133103)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-423, gnl|bosTau2|chr11 (53550142-53549776)
               

               
               65-423, gnl|Hg17|chr2 (24954041-24953690)
               

               
               65-423, gnl|Mm7|chr12 (4132773-4133103)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nmm (0.265604)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.265604)
               

               
               cut (0.169924)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)

	65-423, gnl\|bosTau2\|chr11 (53550142-53549776)
	65-423, gnl\|Hg17\|chr2 (24954041-24953690)
	65-423, gnl\|Mm7\|chr12 (4132773-4133103)