Non-Coding RNA Search

Ss1.1-rcut37_e7.5

Sequence:


               
               CATGGCGGGTCCGGGGGCTGTTTTCCGCCGTCTGGGTGCCTTGTCCGGAGCCGGGGCCTT
AGGCTTGGCCTCCTACGGGGCGCACGGAGCCCAGTTTCCGGATGCCTACGGCAAGGAGCT
CTTTGACAAGACCAACAAACACCACTTCTTACACAGTCTGGCCCTGTTAGGGGTGCCCCT
GTGCAGAAAGCCCCTCTGGGCCGGGTTACTGCTAGCTTCTGGAACTACCTTATTCTGCAC
CAGCTTTTACTACCAGGCTCTGAGCGGAGACCCCAGCATCCAGACTTTGGCCCCTGTGGG
AGGGAGCCTGCTAATTTTGGGCTGGCTTGCCTTGGCTCTTTGAGCTTCCTTGTGTTGAAT
TTCTGGGTGCTTTTTCAAGAAATGGAGCAGGGAGGGCATTAAAAGAGAAAGGCAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGCGGGTCCGGGGGCTGTTTTCCGCCGTCTGGGTGCCTTGTCCGGAGCCGGGGCCTT
AGGCTTGGCCTCCTACGGGGCGCACGGAGCCCAGTTTCCGGATGCCTACGGCAAGGAGCT
CTTTGACAAGACCAACAAACACCACTTCTTACACAGTCTGGCCCTGTTAGGGGTGCCCCT
GTGCAGAAAGCCCCTCTGGGCCGGGTTACTGCTAGCTTCTGGAACTACCTTATTCTGCAC
CAGCTTTTACTACCAGGCTCTGAGCGGAGACCCCAGCATCCAGACTTTGGCCCCTGTGGG
AGGGAGCCTGCTAATTTTGGGCTGGCTTGCCTTGGCTCTTTGAGCTTCCTTGTGTTGAAT
TTCTGGGTGCTTTTTCAAGAAATGGAGCAGGGAGGGCATTAAAAGAGAAAGGCAAATAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N2U0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N2U0_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-201, gnl|bosTau2|chr13 (42768170-42768369)
               

               
               1-201, gnl|Hg17|chr10 (70953413-70953212)
               

               
               1-201, gnl|Mm7|chr11 (69920138-69920843)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-201, gnl|bosTau2|chr13 (42768170-42768369)
               

               
               1-201, gnl|Hg17|chr10 (70953413-70953212)
               

               
               1-201, gnl|Mm7|chr11 (69920138-69920843)

Expressed library(ies): 31 entry(ies)

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Expressed library(ies): 31 entry(ies)

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               duo (1.20961)
               

               
               cki (0.991408)
               

               
               cje (0.495704)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               jej (0.395687)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               cut (0.339847)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               nbm (0.297974)
               

               
               cst (0.280073)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 31 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (1.20961)
               

               
               cki (0.991408)
               

               
               cje (0.495704)
               

               
               che (0.408942)
               

               
               fli (0.405762)
               

               
               jej (0.395687)
               

               
               eje (0.395335)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               cut (0.339847)
               

               
               sme (0.305437)
               

               
               cag (0.302389)
               

               
               nbm (0.297974)
               

               
               cst (0.280073)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	1-201, gnl\|bosTau2\|chr13 (42768170-42768369)
	1-201, gnl\|Hg17\|chr10 (70953413-70953212)
	1-201, gnl\|Mm7\|chr11 (69920138-69920843)

	duo (1.20961)
	cki (0.991408)
	cje (0.495704)
	che (0.408942)
	fli (0.405762)
	jej (0.395687)
	eje (0.395335)
	elu (0.385356)
	nlu (0.383362)
	cut (0.339847)
	sme (0.305437)
	cag (0.302389)
	nbm (0.297974)
	cst (0.280073)
	mas (0.210305)
	tes (0.207814)
	aor (0.195274)
	col (0.195008)
	cmu (0.186393)
	nep (0.183925)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	eli (0.151814)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	clu (0.119646)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)