Non-Coding RNA Search

Ss1.1-rcut37_f7.5

Sequence:


               
               GGGGACTTTAATAGTACCCCATCAACAGGAATGTATCACTTTGTCATCAATGGCAGCATT
CCAGAGGATCATGAAGACTGGGCTTCAAATGGGGAAGAAGAACGATGCAACATGTCTCTT
ACCCATTTCTTCAAACTGAAAAGTGCTTGTGGTGAACCTGCTTATACAAATTATGTTGGT
GGTTTTCATGGATGTCTGGATTACATTTTCATTGACTTAAACACTTTAGAGGTTGAACAG
GTGATTCCATTACCAAGTCATGAAGAAGTTACCACCCACCAGGCCTTACCTAGTGTTTCC
CATCCTTCTGATCATATAGCACTTGTGTGCGACTTAAAATGGAAATAGATTTGTGTTTAA
TGGAATTTAAGACTGCTTTAGTAAGAAATTTATTATGAATCAAAGCTTATGTGTAACCTT
CAAAGAGGAAAACTAGACACTAAGGTAAAATATTCTTACAATACTAATTATGTTCCAGTG
TCTTCATTACATGATTGTCATAATGTTTGCATAATACAGTATAGTTTCTCTATTCTTTTT
TTCTACACTTGAAGGAAAAACAAATATATTTATGACAGGCAGGAAGAACATTGAACTATT
ATGTACATTTTATAAGTACTTTTTTTTGCTAGTAATTAAAAATTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGACTTTAATAGTACCCCATCAACAGGAATGTATCACTTTGTCATCAATGGCAGCATT
CCAGAGGATCATGAAGACTGGGCTTCAAATGGGGAAGAAGAACGATGCAACATGTCTCTT
ACCCATTTCTTCAAACTGAAAAGTGCTTGTGGTGAACCTGCTTATACAAATTATGTTGGT
GGTTTTCATGGATGTCTGGATTACATTTTCATTGACTTAAACACTTTAGAGGTTGAACAG
GTGATTCCATTACCAAGTCATGAAGAAGTTACCACCCACCAGGCCTTACCTAGTGTTTCC
CATCCTTCTGATCATATAGCACTTGTGTGCGACTTAAAATGGAAATAGATTTGTGTTTAA
TGGAATTTAAGACTGCTTTAGTAAGAAATTTATTATGAATCAAAGCTTATGTGTAACCTT
CAAAGAGGAAAACTAGACACTAAGGTAAAATATTCTTACAATACTAATTATGTTCCAGTG
TCTTCATTACATGATTGTCATAATGTTTGCATAATACAGTATAGTTTCTCTATTCTTTTT
TTCTACACTTGAAGGAAAAACAAATATATTTATGACAGGCAGGAAGAACATTGAACTATT
ATGTACATTTTATAAGTACTTTTTTTTGCTAGTAATTAAAAATTTTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-359, - strand, RNAz p=0.903528

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, - strand, RNAz p=0.903528

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-648, gnl|bosTau2|chr22 (33503492-33502859)
               

               
               1-648, gnl|Hg17|chr3 (57520424-57521444)
               

               
               1-648, gnl|Mm7|chr14 (24056639-24055995)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-648, gnl|bosTau2|chr22 (33503492-33502859)
               

               
               1-648, gnl|Hg17|chr3 (57520424-57521444)
               

               
               1-648, gnl|Mm7|chr14 (24056639-24055995)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cut (0.169924)
               

               
               isp (0.150376)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               isp (0.150376)
               

               
               pla (0.133672)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	1-648, gnl\|bosTau2\|chr22 (33503492-33502859)
	1-648, gnl\|Hg17\|chr3 (57520424-57521444)
	1-648, gnl\|Mm7\|chr14 (24056639-24055995)

	cut (0.169924)
	isp (0.150376)
	pla (0.133672)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)