Non-Coding RNA Search

Ss1.1-rcut39_b9.5

Sequence:


               
               TATGTATCGCTCTTAATTTTTATTGTATATCTGTTTTGCATGAAAATAGTTGCCTGTGAA
TTCTTGTTGGCTAATGATTTGATTTTAATAGAGTGAATTCCAGAATTTAATGGTTTGATG
CAGATGCGTTCTGCCAAGCAATTTAGCAAAGTGTTTACACTACCCCAGATCCAGCTGGAC
AGAGCCTGTGCTTCTTCTCTGATAACAGTTGAGGGAGTGATGAGTGCAAATTTCTGGATG
TTTTCCCCCTTTAAAAACAAACACATCTTTTCTTATGTGGCAGCCCTATTAAAGTGACAA
GGGATTAATTTTTAATTTAATTTCAATGTCAGCAGCTTTGTCCTGTACCCATTTTCTCTC
TTTCTTACTACGCGTGTCCTTTTAAACTATGTTTTTCTGAGGAGCAACTGATAAACCATT
GACTCACCCCACGGAGAACCCTTGTTTTACTTTCCTCTTGAAAAGCTCTGACCTCTTTGC
CAGTGCTTCAAATCACCCAGGAGAGTGGCTTGCGTAGCTTTTGAAAGGGTTACGTAATAG
CGGCGGTACCAGGCTTGAAGTTCTACTGAGTGGAGGGAAAACACTGATGGAAAATAGTGG
TCATTCTTGATAGAAAACCTCCATCCGGTTTTCCAGCACGGCCCTGCTAAATGGACAGTT
GGAAACAATTACCACGAGTTTCTGGGGATATTGATGGAGACCCTTTTCTGTTACAGGCTT
TATATCCCTAAGAGATGGCTGGAGTTCCTGCTGTGGGTGCAGTGGGTTAATGATCTGGCA
TTGTCTCTGCAGCAGCTTGGTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATGTATCGCTCTTAATTTTTATTGTATATCTGTTTTGCATGAAAATAGTTGCCTGTGAA
TTCTTGTTGGCTAATGATTTGATTTTAATAGAGTGAATTCCAGAATTTAATGGTTTGATG
CAGATGCGTTCTGCCAAGCAATTTAGCAAAGTGTTTACACTACCCCAGATCCAGCTGGAC
AGAGCCTGTGCTTCTTCTCTGATAACAGTTGAGGGAGTGATGAGTGCAAATTTCTGGATG
TTTTCCCCCTTTAAAAACAAACACATCTTTTCTTATGTGGCAGCCCTATTAAAGTGACAA
GGGATTAATTTTTAATTTAATTTCAATGTCAGCAGCTTTGTCCTGTACCCATTTTCTCTC
TTTCTTACTACGCGTGTCCTTTTAAACTATGTTTTTCTGAGGAGCAACTGATAAACCATT
GACTCACCCCACGGAGAACCCTTGTTTTACTTTCCTCTTGAAAAGCTCTGACCTCTTTGC
CAGTGCTTCAAATCACCCAGGAGAGTGGCTTGCGTAGCTTTTGAAAGGGTTACGTAATAG
CGGCGGTACCAGGCTTGAAGTTCTACTGAGTGGAGGGAAAACACTGATGGAAAATAGTGG
TCATTCTTGATAGAAAACCTCCATCCGGTTTTCCAGCACGGCCCTGCTAAATGGACAGTT
GGAAACAATTACCACGAGTTTCTGGGGATATTGATGGAGACCCTTTTCTGTTACAGGCTT
TATATCCCTAAGAGATGGCTGGAGTTCCTGCTGTGGGTGCAGTGGGTTAATGATCTGGCA
TTGTCTCTGCAGCAGCTTGGTTTG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               1-738, gnl|bosTau2|chr22 (45184287-45183555)
               

               
               1-738, gnl|Hg17|chr3 (11652872-11652138)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-738, gnl|bosTau2|chr22 (45184287-45183555)
               

               
               1-738, gnl|Hg17|chr3 (11652872-11652138)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fli (0.202881)
               

               
               cut (0.169924)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               cut (0.169924)

	1-738, gnl\|bosTau2\|chr22 (45184287-45183555)
	1-738, gnl\|Hg17\|chr3 (11652872-11652138)