Non-Coding RNA Search

Ss1.1-rcut39_g5.5

Sequence:


               
               TATATTACCTAGTTATTCTTTCAAAACAAACAAAAAAAAAAAAAACAAAAACTGACGCAC
TGCACTAGTTATTATTAGATATTCTTAGTCTTTTTTGTACATGGAGATTTAAGTTCTAAG
ATGGTTTATATAATAGGTTATACCTACATTTATATTGTAGAATAATATTAAAAAGCCTGT
TCCAGCGACTCCCAAGCAGCACGGGCAGGCAGATGTACCATTGTTAGCGGTGTATGCTCG
GCCTCGTGGTCCATATATTCTGCACTTTTATATTTGCCACCAGAGTGGTAGTTTGCTGGC
AAAAAGAGAGAGAGAGGGGAAAAAAAAATTACAATTCTTACAAGCTGAGTTCTTTTCTTA
GCCTTGAGTGACCAAGAAGAATTTGCTTGGGGCAAATTGTGGCAAATATTTTCCCAGACA
GGGGAAGAGTCCTGCAGATTACAGATTACTCATGTTTTCACGCCTTGAGGATTCTTTTTA
CACGGGGTCTAGGTGACCAATGGATCGTTCATACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATTACCTAGTTATTCTTTCAAAACAAACAAAAAAAAAAAAAACAAAAACTGACGCAC
TGCACTAGTTATTATTAGATATTCTTAGTCTTTTTTGTACATGGAGATTTAAGTTCTAAG
ATGGTTTATATAATAGGTTATACCTACATTTATATTGTAGAATAATATTAAAAAGCCTGT
TCCAGCGACTCCCAAGCAGCACGGGCAGGCAGATGTACCATTGTTAGCGGTGTATGCTCG
GCCTCGTGGTCCATATATTCTGCACTTTTATATTTGCCACCAGAGTGGTAGTTTGCTGGC
AAAAAGAGAGAGAGAGGGGAAAAAAAAATTACAATTCTTACAAGCTGAGTTCTTTTCTTA
GCCTTGAGTGACCAAGAAGAATTTGCTTGGGGCAAATTGTGGCAAATATTTTCCCAGACA
GGGGAAGAGTCCTGCAGATTACAGATTACTCATGTTTTCACGCCTTGAGGATTCTTTTTA
CACGGGGTCTAGGTGACCAATGGATCGTTCATACAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               113-231, - strand, RNAz p=0.511403
               

               
               322-475, - strand, RNAz p=0.871257

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-231, - strand, RNAz p=0.511403
               

               
               322-475, - strand, RNAz p=0.871257

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               216-286, + strand, RNAmicro p=0.974964

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               216-286, + strand, RNAmicro p=0.974964

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-515, gnl|bosTau2|chr1 (29245104-29245629)
               

               
               1-515, gnl|Hg17|chr3 (109007356-109007876)
               

               
               1-515, gnl|Mm7|chr16 (49959118-49958541)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-515, gnl|bosTau2|chr1 (29245104-29245629)
               

               
               1-515, gnl|Hg17|chr3 (109007356-109007876)
               

               
               1-515, gnl|Mm7|chr16 (49959118-49958541)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               ova (0.129132)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               ova (0.129132)

	113-231, - strand, RNAz p=0.511403
	322-475, - strand, RNAz p=0.871257

	1-515, gnl\|bosTau2\|chr1 (29245104-29245629)
	1-515, gnl\|Hg17\|chr3 (109007356-109007876)
	1-515, gnl\|Mm7\|chr16 (49959118-49958541)