Non-Coding RNA Search

Ss1.1-rcut39_j3.5

Sequence:


               
               TTCCAGGCTGGACTCTGTCCCCAGGAGCACAGATAGCCCTCGGGCTGCTTTAAGCAGCTC
TGAGCTGTTGGAACTTGGTGACAGCCTCATGAGACTAGGAGCAGAAAGCGACCCATTTTC
AACTGACACCCTGAGTTCACACCCTCTCAGTGAGGCAAGAAGTGAATTCTATCCCTCATC
CAGTGACCCCGACTCAGCTGACCAGGACGCCCACCTCAGTGACAGTCTTCTTGGCAATAT
CATGGCATGGTTTCATGACATGAACCCTCAGAGCATCGCCCTCATCCCTCCAGCAGCTGC
AGAAGTCAGTGCAGACTCCCAGCTCCCCTGTGTCAAAGAGGAGTCAGAAGGCGTGAGAGC
TGTGGAACTGATGCCTCCAGAAGAAGATTCAGTGTTTGAAGATGGTGTGGTCTGTGACGG
TAGAGGAACCCAGATAGAAGAAGAAAATCCTCTGGAAGGAAATATTCTGGCTGGGGAAGC
AGCAGCAAACACTGGCAGCGGTGGTAGTGAGGCAGCCGACAAGGAGGATGGTTCAGATGT
TGCAAGTCAGACACCTGCAACCTCAAGTGACTGGCGTGAACAAATACATTTAGTGTGAAC
TGCACACCTCGGGGCTCTAAGTGAATCACAGGTACAGATGGTATGCTAGTGGAGTATGCT
TTATAGAGACTTGATCCACTTAATTCCAACTAATTATAAACCACTGACATTAGGCTTAAA
TATGAAGGAGTTCCCTTAAATGGTAGCTTCATTTCTGATTTTAACCTTACAGGGAATTTC
TTTTGTATTTAATTGGATAGCTTTTCCCCTTTTTGCTGACAAACAGAAGAGCAGGAGAGA
GAGAAAGAGAAACACAACTGAAATAAATAGGATGGATTAGATTTCACATTCAGAAAATGC
AGTCCTCTGTTTAGCCTAAGGTCGGCAATAATTCAATTGGACGTTTAAATTAAAGGCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCAGGCTGGACTCTGTCCCCAGGAGCACAGATAGCCCTCGGGCTGCTTTAAGCAGCTC
TGAGCTGTTGGAACTTGGTGACAGCCTCATGAGACTAGGAGCAGAAAGCGACCCATTTTC
AACTGACACCCTGAGTTCACACCCTCTCAGTGAGGCAAGAAGTGAATTCTATCCCTCATC
CAGTGACCCCGACTCAGCTGACCAGGACGCCCACCTCAGTGACAGTCTTCTTGGCAATAT
CATGGCATGGTTTCATGACATGAACCCTCAGAGCATCGCCCTCATCCCTCCAGCAGCTGC
AGAAGTCAGTGCAGACTCCCAGCTCCCCTGTGTCAAAGAGGAGTCAGAAGGCGTGAGAGC
TGTGGAACTGATGCCTCCAGAAGAAGATTCAGTGTTTGAAGATGGTGTGGTCTGTGACGG
TAGAGGAACCCAGATAGAAGAAGAAAATCCTCTGGAAGGAAATATTCTGGCTGGGGAAGC
AGCAGCAAACACTGGCAGCGGTGGTAGTGAGGCAGCCGACAAGGAGGATGGTTCAGATGT
TGCAAGTCAGACACCTGCAACCTCAAGTGACTGGCGTGAACAAATACATTTAGTGTGAAC
TGCACACCTCGGGGCTCTAAGTGAATCACAGGTACAGATGGTATGCTAGTGGAGTATGCT
TTATAGAGACTTGATCCACTTAATTCCAACTAATTATAAACCACTGACATTAGGCTTAAA
TATGAAGGAGTTCCCTTAAATGGTAGCTTCATTTCTGATTTTAACCTTACAGGGAATTTC
TTTTGTATTTAATTGGATAGCTTTTCCCCTTTTTGCTGACAAACAGAAGAGCAGGAGAGA
GAGAAAGAGAAACACAACTGAAATAAATAGGATGGATTAGATTTCACATTCAGAAAATGC
AGTCCTCTGTTTAGCCTAAGGTCGGCAATAATTCAATTGGACGTTTAAATTAAAGGCTTA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-159, - strand, RNAz p=0.744695
               

               
               397-516, - strand, RNAz p=0.853896
               

               
               675-830, - strand, RNAz p=0.965387

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.744695
               

               
               397-516, - strand, RNAz p=0.853896
               

               
               675-830, - strand, RNAz p=0.965387

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               720-803, + strand, RNAmicro p=0.998503

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               720-803, + strand, RNAmicro p=0.998503

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr4 (1294524-1295463)
               

               
               1-960, gnl|Hg17|chr7 (91672323-91673270)
               

               
               1-960, gnl|Mm7|chr5 (3699356-3698431)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr4 (1294524-1295463)
               

               
               1-960, gnl|Hg17|chr7 (91672323-91673270)
               

               
               1-960, gnl|Mm7|chr5 (3699356-3698431)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cut (0.509771)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.509771)
               

               
               ldo (0.0970026)

	1-159, - strand, RNAz p=0.744695
	397-516, - strand, RNAz p=0.853896
	675-830, - strand, RNAz p=0.965387

	1-960, gnl\|bosTau2\|chr4 (1294524-1295463)
	1-960, gnl\|Hg17\|chr7 (91672323-91673270)
	1-960, gnl\|Mm7\|chr5 (3699356-3698431)