Non-Coding RNA Search

Ss1.1-rcut40_k21.5.5

Sequence:


               
               GAGAGCACGTGTGCGAGTGAGCAAGAGCTCAGGAGAGGCACCACGTGTCCCTGGATCTGT
GGCATAAGCACAATACCTCTGAGGCTACATAAGCCTGGAGGGAGTGGGCAGGGAGCAAAT
TTGAGCTTTAGATTGTTGAGTTGGCCCCTTCCTGGGTGATGCCCTTGGGACTCTAGTAGG
AAATAAATAACCCTTTCCAGATTCCTCAGCTACCTCACTCCCTGCACACGTGGCAGGGGG
TGTGGCTTCAAAGGGAGCTGGTATTCTTTTTCTGGTGGTGGTGTGCTTCAGCACGCAAAT
TACCATGCACATCAACACCTACAAATTTACATACAGGGTAAGGTCTTTCATTTCAGCCAT
TTTCCCTTTCTAAGAAGGGCAACTTCAGCTAGAGTGAGTTTTTCTCAACTCTGAAGCTGA
GTCTCTGGAAGGAGTGGCTTGCCAGAGGAGGGAGGTGGGGAAACAGGGCAAGGTTCAGCT
CTCCTAACAGCTAGGACTGCAGACTCTGTCCCTCACCCCCTAGAGAATGCATTTCTTTGC
CCACTCCACCCCGCTATTTTCTCAGCGTGAAGAATGCTAACGAAGGTTTAGGGGCACTCC
CTTGTGACTCTACCACTCATCTACAAGCTGTATGGGCTCCAGCAAGCTGCTTAACCTTGC
AGAGCCTCAGTTTCTTCATATGTAAAATGGTGATAATAACGCCTACCTCCCAGTTTGTTG
TGGGAATTATAAGCACAGATGTTTGTAAAGTGCCTGGCACAAGTAGGTGCTCAATAAAAA
TTAGCTATTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGCACGTGTGCGAGTGAGCAAGAGCTCAGGAGAGGCACCACGTGTCCCTGGATCTGT
GGCATAAGCACAATACCTCTGAGGCTACATAAGCCTGGAGGGAGTGGGCAGGGAGCAAAT
TTGAGCTTTAGATTGTTGAGTTGGCCCCTTCCTGGGTGATGCCCTTGGGACTCTAGTAGG
AAATAAATAACCCTTTCCAGATTCCTCAGCTACCTCACTCCCTGCACACGTGGCAGGGGG
TGTGGCTTCAAAGGGAGCTGGTATTCTTTTTCTGGTGGTGGTGTGCTTCAGCACGCAAAT
TACCATGCACATCAACACCTACAAATTTACATACAGGGTAAGGTCTTTCATTTCAGCCAT
TTTCCCTTTCTAAGAAGGGCAACTTCAGCTAGAGTGAGTTTTTCTCAACTCTGAAGCTGA
GTCTCTGGAAGGAGTGGCTTGCCAGAGGAGGGAGGTGGGGAAACAGGGCAAGGTTCAGCT
CTCCTAACAGCTAGGACTGCAGACTCTGTCCCTCACCCCCTAGAGAATGCATTTCTTTGC
CCACTCCACCCCGCTATTTTCTCAGCGTGAAGAATGCTAACGAAGGTTTAGGGGCACTCC
CTTGTGACTCTACCACTCATCTACAAGCTGTATGGGCTCCAGCAAGCTGCTTAACCTTGC
AGAGCCTCAGTTTCTTCATATGTAAAATGGTGATAATAACGCCTACCTCCCAGTTTGTTG
TGGGAATTATAAGCACAGATGTTTGTAAAGTGCCTGGCACAAGTAGGTGCTCAATAAAAA
TTAGCTATTGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               104-257, + strand, RNAz p=0.776854

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-257, + strand, RNAz p=0.776854

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC070098, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC070098, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               33-257, gnl|bosTau2|chr8 (41150893-41150670)
               

               
               33-257, gnl|Hg17|chr9 (34360011-34359780)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-257, gnl|bosTau2|chr8 (41150893-41150670)
               

               
               33-257, gnl|Hg17|chr9 (34360011-34359780)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.213858)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               cut (0.169924)
               

               
               bfe (0.149858)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ese (0.126502)

	33-257, gnl\|bosTau2\|chr8 (41150893-41150670)
	33-257, gnl\|Hg17\|chr9 (34360011-34359780)

	nms (0.213858)
	cut (0.169924)
	bfe (0.149858)
	hlv (0.139256)
	nca (0.136874)
	ese (0.126502)