Non-Coding RNA Search

Ss1.1-rdbla0101_f1.5

Sequence:


               
               GGGTTTTAAGGGACGTGGGCAGTGCGTGCGGAACGCGCGAGTCTTGTTAGCTGTGCAGAC
TTTTAAGGGACGTGGGCAGTGCGTGCGGAACGCGCGAGTCTTGTTAGCTGTGCAGACGGC
CCTGCGTGGCTTTGGAGGTAGTGCTGTGTCGGTGACCCGCTCTTTTCACTGACGAGGAGA
CCTCTGCGGGGTCGTTCCGCCTCCCGGGCCCTTTATCTTGTTCATCGGGAGCGTCACCTT
TGAGAAAGGGCGTCTTCATCGTCAGGGGAAAAGACTAAAGATTAGATTGTAAGAGAAGAA
AATAGAAGCCATGTTTCGAAGACCTGTGTTTCAGGTACTTCATCAGTTTGTAAGACATGA
ATCTGAAGTAGCTAGCAGTTTGGTTCTTGAAAGATCTCTGAATCGTGTGCAGTTACTTGG
TCGAGTAGGTCAGGACCCTGTCATGAGGCAGGTGGAAGGAAAAAACCCAGTCACAATATT
CTCTCTAGCAACGAATGAGATGTGGCGGTCAGGGGAAAATGAAGCATACCAAATGGGCGA
TGTCAGCCAAAAGACTACATGGCACAGAATTTCAGTATTCCGACCAGGCCTCCGAGACGT
GGCATATCAGTATGTGAAAAAAGGGTCTCGAGTTTACGTGGAAGGGAAAGTAGACTATGG
CGAATACACGGATAAAAATAATGTGAGACGACAAGCAACCACAATTATAGCTGATAACAT
TATATTTCTGAGTGACCAGGTGAAAGAGAAGGCATAGAACGGACGGTTCTTCTTTGGCCA
TCGTTTGGTACAGTCTCATTTCCAAATCATGATAGTCTTTATAGTTTCTAAGGACAAGAA
TTAAAATACTCTTTTATGTAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTTTTAAGGGACGTGGGCAGTGCGTGCGGAACGCGCGAGTCTTGTTAGCTGTGCAGAC
TTTTAAGGGACGTGGGCAGTGCGTGCGGAACGCGCGAGTCTTGTTAGCTGTGCAGACGGC
CCTGCGTGGCTTTGGAGGTAGTGCTGTGTCGGTGACCCGCTCTTTTCACTGACGAGGAGA
CCTCTGCGGGGTCGTTCCGCCTCCCGGGCCCTTTATCTTGTTCATCGGGAGCGTCACCTT
TGAGAAAGGGCGTCTTCATCGTCAGGGGAAAAGACTAAAGATTAGATTGTAAGAGAAGAA
AATAGAAGCCATGTTTCGAAGACCTGTGTTTCAGGTACTTCATCAGTTTGTAAGACATGA
ATCTGAAGTAGCTAGCAGTTTGGTTCTTGAAAGATCTCTGAATCGTGTGCAGTTACTTGG
TCGAGTAGGTCAGGACCCTGTCATGAGGCAGGTGGAAGGAAAAAACCCAGTCACAATATT
CTCTCTAGCAACGAATGAGATGTGGCGGTCAGGGGAAAATGAAGCATACCAAATGGGCGA
TGTCAGCCAAAAGACTACATGGCACAGAATTTCAGTATTCCGACCAGGCCTCCGAGACGT
GGCATATCAGTATGTGAAAAAAGGGTCTCGAGTTTACGTGGAAGGGAAAGTAGACTATGG
CGAATACACGGATAAAAATAATGTGAGACGACAAGCAACCACAATTATAGCTGATAACAT
TATATTTCTGAGTGACCAGGTGAAAGAGAAGGCATAGAACGGACGGTTCTTCTTTGGCCA
TCGTTTGGTACAGTCTCATTTCCAAATCATGATAGTCTTTATAGTTTCTAAGGACAAGAA
TTAAAATACTCTTTTATGTAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61881409|ref|XP_593844.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61881409|ref|XP_593844.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               276-389, - strand, RNAz p=0.989516

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-389, - strand, RNAz p=0.989516

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               267-875, gnl|bosTau2|chrX (25849942-25849336)
               

               
               267-875, gnl|Hg17|chr10 (30220776-30219858)
               

               
               267-875, gnl|Mm7|chr11 (33124893-33125487)
               


               
               349-555, gnl|bosTau2|chr12 (20527994-20528200)
               

               
               349-555, gnl|Hg17|chr10 (30220379-30220175)
               

               
               349-555, gnl|Mm7|chr11 (33124966-33125172)
               


               
               577-871, gnl|bosTau2|chr12 (20528202-20528495)
               

               
               577-871, gnl|Hg17|chr10 (30220173-30219857)
               

               
               577-871, gnl|Mm7|chr11 (33125174-33125486)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               267-875, gnl|bosTau2|chrX (25849942-25849336)
               

               
               267-875, gnl|Hg17|chr10 (30220776-30219858)
               

               
               267-875, gnl|Mm7|chr11 (33124893-33125487)
               


               
               349-555, gnl|bosTau2|chr12 (20527994-20528200)
               

               
               349-555, gnl|Hg17|chr10 (30220379-30220175)
               

               
               349-555, gnl|Mm7|chr11 (33124966-33125172)
               


               
               577-871, gnl|bosTau2|chr12 (20528202-20528495)
               

               
               577-871, gnl|Hg17|chr10 (30220173-30219857)
               

               
               577-871, gnl|Mm7|chr11 (33125174-33125486)

Expressed library(ies): 33 entry(ies)

More info

Expressed library(ies): 33 entry(ies)

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               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               hea (0.408998)
               

               
               pgl (0.35545)
               

               
               ski (0.29347)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               clu (0.239292)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.462535)
               

               
               mgp (0.461361)
               

               
               hea (0.408998)
               

               
               pgl (0.35545)
               

               
               ski (0.29347)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               clu (0.239292)
               

               
               fli (0.202881)
               

               
               eje (0.197668)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	267-875, gnl\|bosTau2\|chrX (25849942-25849336)
	267-875, gnl\|Hg17\|chr10 (30220776-30219858)
	267-875, gnl\|Mm7\|chr11 (33124893-33125487)

	349-555, gnl\|bosTau2\|chr12 (20527994-20528200)
	349-555, gnl\|Hg17\|chr10 (30220379-30220175)
	349-555, gnl\|Mm7\|chr11 (33124966-33125172)

	577-871, gnl\|bosTau2\|chr12 (20528202-20528495)
	577-871, gnl\|Hg17\|chr10 (30220173-30219857)
	577-871, gnl\|Mm7\|chr11 (33125174-33125486)

	tbr (0.462535)
	mgp (0.461361)
	hea (0.408998)
	pgl (0.35545)
	ski (0.29347)
	ova (0.258264)
	sug (0.254582)
	clu (0.239292)
	fli (0.202881)
	eje (0.197668)
	aor (0.195274)
	sto (0.179824)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	nje (0.16592)
	cje (0.165235)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	lun (0.150489)
	csk (0.140746)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	nmm (0.132802)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	cly (0.120642)
	med (0.116252)
	spc (0.113366)
	ldo (0.0970026)