Ss1.1-rdbla0101_h13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTGTGATGTAGGTTGCAGATGCGGCTCGGATCCTGCATTGCTGTGGCTGTGGTATAGGC TGGCAGCTGCAGCTCCCATTCAACCCTTAGTCTGGTAATTAAAAAAAAAAAGGCAGCAAC TATTTCAAAGCCTCATAGAGTAGAGAACGTGGTGCCACAGATCCATCTCCAAGACAGAAA TTTCTGTATGCACAAAGAATTCCAGTCTTGTGCTAAGACTGAGCCACCACTGAGGGCAGA GATCTTGTTGAGCATGTGAGGCAGCAGCACAAATTCTCAAGTCTCTACTTAAATTGTTTT ACACAAAGTCTTCTTGTTGAGGCAGATGAGAAATGATCTCCTAGAGAGATAAAAATAAAA ACAAGTATGGCACCCCTTCTTTTGTATGTAGTAGGCAACGTTGACCCTGCCAGGGAGGTT ACAGCGCCCCCTGTGCTGTCGCCAAGCAACAGACACGGACAAGCTGTGAAAGGAGAGCCT CCGTTTACCTGTTTCCCAGTTTGATGGTCACTGCTAGTGTTTCTTAAGGGTTTCCCCACT TGTTTTAGCTTTGTGAAGTATTTTTCGCTTAATCATAACTTGCCTTTCAAGCAATGGTAC ATGACCTGGTTCAATGTTTGGTTCTGAATTTATAAACTGATGTGTTTAGGTATCTTAATG TAACTTGACAAGTCCTCAGTAGGCAGCTGTGAATTTCTGTAACATTTTGATAGGCTTTAA AGCACCTGACTTAGACCTTGTTGAATAAAGCACTTTTCAAAGAGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTGTGATGTAGGTTGCAGATGCGGCTCGGATCCTGCATTGCTGTGGCTGTGGTATAGGC TGGCAGCTGCAGCTCCCATTCAACCCTTAGTCTGGTAATTAAAAAAAAAAAGGCAGCAAC TATTTCAAAGCCTCATAGAGTAGAGAACGTGGTGCCACAGATCCATCTCCAAGACAGAAA TTTCTGTATGCACAAAGAATTCCAGTCTTGTGCTAAGACTGAGCCACCACTGAGGGCAGA GATCTTGTTGAGCATGTGAGGCAGCAGCACAAATTCTCAAGTCTCTACTTAAATTGTTTT ACACAAAGTCTTCTTGTTGAGGCAGATGAGAAATGATCTCCTAGAGAGATAAAAATAAAA ACAAGTATGGCACCCCTTCTTTTGTATGTAGTAGGCAACGTTGACCCTGCCAGGGAGGTT ACAGCGCCCCCTGTGCTGTCGCCAAGCAACAGACACGGACAAGCTGTGAAAGGAGAGCCT CCGTTTACCTGTTTCCCAGTTTGATGGTCACTGCTAGTGTTTCTTAAGGGTTTCCCCACT TGTTTTAGCTTTGTGAAGTATTTTTCGCTTAATCATAACTTGCCTTTCAAGCAATGGTAC ATGACCTGGTTCAATGTTTGGTTCTGAATTTATAAACTGATGTGTTTAGGTATCTTAATG TAACTTGACAAGTCCTCAGTAGGCAGCTGTGAATTTCTGTAACATTTTGATAGGCTTTAA AGCACCTGACTTAGACCTTGTTGAATAAAGCACTTTTCAAAGAGAAAAAAAAAAAAAAAA |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 235-492, gnl|bosTau2|chr13 (31475435-31475172) | |
| 235-492, gnl|canFam2|chr24 (19777235-19776906) | |
| 235-492, gnl|echTel1|scaffold_292613 (239476-239816) | |
| 235-492, gnl|hg17|chr20 (4708830-4709178) | |
| 235-492, gnl|Hg17|chr20 (4709251-4708975) | |
| 235-492, gnl|mm7|chr2 (131733877-131734189) | |
| 235-492, gnl|Mm7|chr2 (131734254-131734011) | |
| 235-492, gnl|oryCun1|scaffold_200186 (19754-19457) | |
| 235-492, gnl|panTro1|chr21 (4676696-4677044) | |
| 235-492, gnl|rheMac2|chr10 (38117001-38117355) | |
| 235-492, gnl|rn3|chr3 (119639940-119640227) | |
| 510-766, gnl|bosTau2|chr13 (31475114-31474858) | |
| 510-766, gnl|canFam2|chr24 (19777443-19777236) | |
| 510-766, gnl|echTel1|scaffold_292613 (239256-239475) | |
| 510-766, gnl|hg17|chr20 (4708622-4708829) | |
| 510-766, gnl|Hg17|chr20 (4708919-4708668) | |
| 510-766, gnl|loxAfr1|scaffold_6014 (73934-74141) | |
| 510-766, gnl|mm7|chr2 (131733664-131733876) | |
| 510-766, gnl|Mm7|chr2 (131733973-131733703) | |
| 510-766, gnl|oryCun1|scaffold_200186 (19939-19755) | |
| 510-766, gnl|panTro1|chr21 (4676488-4676695) | |
| 510-766, gnl|rheMac2|chr10 (38116794-38117000) | |
| 510-766, gnl|rn3|chr3 (119639754-119639939) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 235-492, gnl|bosTau2|chr13 (31475435-31475172) | |
| 235-492, gnl|canFam2|chr24 (19777235-19776906) | |
| 235-492, gnl|echTel1|scaffold_292613 (239476-239816) | |
| 235-492, gnl|hg17|chr20 (4708830-4709178) | |
| 235-492, gnl|Hg17|chr20 (4709251-4708975) | |
| 235-492, gnl|mm7|chr2 (131733877-131734189) | |
| 235-492, gnl|Mm7|chr2 (131734254-131734011) | |
| 235-492, gnl|oryCun1|scaffold_200186 (19754-19457) | |
| 235-492, gnl|panTro1|chr21 (4676696-4677044) | |
| 235-492, gnl|rheMac2|chr10 (38117001-38117355) | |
| 235-492, gnl|rn3|chr3 (119639940-119640227) | |
| 510-766, gnl|bosTau2|chr13 (31475114-31474858) | |
| 510-766, gnl|canFam2|chr24 (19777443-19777236) | |
| 510-766, gnl|echTel1|scaffold_292613 (239256-239475) | |
| 510-766, gnl|hg17|chr20 (4708622-4708829) | |
| 510-766, gnl|Hg17|chr20 (4708919-4708668) | |
| 510-766, gnl|loxAfr1|scaffold_6014 (73934-74141) | |
| 510-766, gnl|mm7|chr2 (131733664-131733876) | |
| 510-766, gnl|Mm7|chr2 (131733973-131733703) | |
| 510-766, gnl|oryCun1|scaffold_200186 (19939-19755) | |
| 510-766, gnl|panTro1|chr21 (4676488-4676695) | |
| 510-766, gnl|rheMac2|chr10 (38116794-38117000) | |
| 510-766, gnl|rn3|chr3 (119639754-119639939) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| clu (0.478583) | |
| lnt (0.426925) | |
| elu (0.385356) | |
| fcc (0.197785) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| spc (0.113366) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| lnt (0.426925) | |
| elu (0.385356) | |
| fcc (0.197785) | |
| ret (0.128733) | |
| bla (0.124347) | |
| ecc (0.115035) | |
| spc (0.113366) |