Non-Coding RNA Search

Ss1.1-rdbla0101_j19.5

Sequence:


               
               GGGACAGTTCGTTTTTACTTGAGCCTGCCTTGTACCCTTTTTAACTTAAAGAACAGAGCC
ACACCGGTATTATATGTGTATAGTTATATTGCGTTTGCAGACTAAATTGTCATGTTGTGA
AAGTTTGTGTGTTTTTAATTTTTTTCCCTTTTTCTTCCTTTTTTTTCTTTTGTTTTATTA
TGCTTTTTAATTTTTTTTTCTTTGGGTTTTGTATGAGAGAGAGGTTAAAAGGTTTGGTTT
ACACTGAGTATATGTTGTCAAGTGGCAAAAGTCCACATAGCTCTCCTGTTTTCTGTATAC
GTTCACAGCCTCAAAAAAAATAATTGAAATGGCTTTAAAAACCAAACAAAACACCTCCAT
CCTGTGATAAGTACCTCGAATGGATTCAGCTTTACTCCTTTGTAACTCATCTTTGCATTT
TCAGCATATTTAAACAAACCAACAAAATGAAATACTAATAGTTAAAAGGCTGACCCACGT
GGCTTTGCAGTGCTGTTCGTCCAGAAGCATGGCACACAATGCTTGTGCATGTGGAAACTT
AGCGACTGTCAACATACATTCTCAGGGATTTATCAAAAAAAAAAAATTAAAAAAAGAATG
AGAGCATTTATTGTACTGTATATATATTATAGTATATGTCTGAATATTGAAAATATAACA
TTAACTAATTTATAAAAATATTCTATGTAATGCAAAATACTTGAAGCTGCAGTAGCTTGG
TTTTAAACAAAAACAAAAAAACAATGGAGAGAAAACCTATCAGAAGGACTAAAAGTGCGC
CTTGCTTCAGGGTTGGCTCAGGCGGTGAACTTCATGCTGGGCATCTATGCAGAGCCACCT
TTTGGATTGCATGGTTGGACTGAGATCTATTGGGAGAAATTATATATGTATATATATTTA
TACAATTTATGTATACATATATATATGTATACACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACAGTTCGTTTTTACTTGAGCCTGCCTTGTACCCTTTTTAACTTAAAGAACAGAGCC
ACACCGGTATTATATGTGTATAGTTATATTGCGTTTGCAGACTAAATTGTCATGTTGTGA
AAGTTTGTGTGTTTTTAATTTTTTTCCCTTTTTCTTCCTTTTTTTTCTTTTGTTTTATTA
TGCTTTTTAATTTTTTTTTCTTTGGGTTTTGTATGAGAGAGAGGTTAAAAGGTTTGGTTT
ACACTGAGTATATGTTGTCAAGTGGCAAAAGTCCACATAGCTCTCCTGTTTTCTGTATAC
GTTCACAGCCTCAAAAAAAATAATTGAAATGGCTTTAAAAACCAAACAAAACACCTCCAT
CCTGTGATAAGTACCTCGAATGGATTCAGCTTTACTCCTTTGTAACTCATCTTTGCATTT
TCAGCATATTTAAACAAACCAACAAAATGAAATACTAATAGTTAAAAGGCTGACCCACGT
GGCTTTGCAGTGCTGTTCGTCCAGAAGCATGGCACACAATGCTTGTGCATGTGGAAACTT
AGCGACTGTCAACATACATTCTCAGGGATTTATCAAAAAAAAAAAATTAAAAAAAGAATG
AGAGCATTTATTGTACTGTATATATATTATAGTATATGTCTGAATATTGAAAATATAACA
TTAACTAATTTATAAAAATATTCTATGTAATGCAAAATACTTGAAGCTGCAGTAGCTTGG
TTTTAAACAAAAACAAAAAAACAATGGAGAGAAAACCTATCAGAAGGACTAAAAGTGCGC
CTTGCTTCAGGGTTGGCTCAGGCGGTGAACTTCATGCTGGGCATCTATGCAGAGCCACCT
TTTGGATTGCATGGTTGGACTGAGATCTATTGGGAGAAATTATATATGTATATATATTTA
TACAATTTATGTATACATATATATATGTATACACAC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-242, gnl|bosTau2|chr1 (74560530-74560306)
               

               
               1-242, gnl|Hg17|chr5 (60875940-60876177)
               

               
               1-242, gnl|Mm7|chr13 (104855705-104855470)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-242, gnl|bosTau2|chr1 (74560530-74560306)
               

               
               1-242, gnl|Hg17|chr5 (60875940-60876177)
               

               
               1-242, gnl|Mm7|chr13 (104855705-104855470)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               kid (0.129735)
               

               
               bla (0.124347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.129735)
               

               
               bla (0.124347)

	1-242, gnl\|bosTau2\|chr1 (74560530-74560306)
	1-242, gnl\|Hg17\|chr5 (60875940-60876177)
	1-242, gnl\|Mm7\|chr13 (104855705-104855470)