Ss1.1-rdbla0101_l17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGCGCAGCTCGTGGCGGAGGCGCGCAGTTTGCGGGTCTCCGCGCGACTCTTAGCGCAG AACCAGGGAGCTGCGGCGCGGGCGTCATGTCTGACAACGAGGACAATTTTGATGGCGATG ACTTTGACGATGTGGAGGAGGACGAAGGGCTAGATGACTTGGAAAATGCCGAGGAGGAGG GCCAGGAGAACGTTGAGATCCTCCCTTCTGGAGAGCGGCCGCAGGCCAACCAGAAGCGAA TCACCACGCCGTATATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCCCTTC AGATCGCGATGTGTGCCCCCGTGATGGTGGAGCTGGAGGGGGAGACAGATCCCTTGCTCA TCGCCATGAAAGAGCTCAAGGCCCGAAAGATCCCCATCATCATCCGCCGCTACCTGCCTG ACGGGAGCTATGAAGACTGGGGGGTGGACGAGCTCATCATCAGCGACTGAGCTGCAGTCA CCTTCCTGACGGTGCCTCGCCCCAGTGTTCAGTCTCACCTTCTTTACGCGTGTAAATAAT AAACCCTTCAACCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGCGCAGCTCGTGGCGGAGGCGCGCAGTTTGCGGGTCTCCGCGCGACTCTTAGCGCAG AACCAGGGAGCTGCGGCGCGGGCGTCATGTCTGACAACGAGGACAATTTTGATGGCGATG ACTTTGACGATGTGGAGGAGGACGAAGGGCTAGATGACTTGGAAAATGCCGAGGAGGAGG GCCAGGAGAACGTTGAGATCCTCCCTTCTGGAGAGCGGCCGCAGGCCAACCAGAAGCGAA TCACCACGCCGTATATGACCAAGTACGAGCGAGCCCGCGTGCTGGGCACCCGAGCCCTTC AGATCGCGATGTGTGCCCCCGTGATGGTGGAGCTGGAGGGGGAGACAGATCCCTTGCTCA TCGCCATGAAAGAGCTCAAGGCCCGAAAGATCCCCATCATCATCCGCCGCTACCTGCCTG ACGGGAGCTATGAAGACTGGGGGGTGGACGAGCTCATCATCAGCGACTGAGCTGCAGTCA CCTTCCTGACGGTGCCTCGCCCCAGTGTTCAGTCTCACCTTCTTTACGCGTGTAAATAAT AAACCCTTCAACCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 175-266, - strand, RNAz p=0.73834 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 175-266, - strand, RNAz p=0.73834 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 15-588, gnl|bosTau2|chr8 (19206959-19206386) | |
| 175-308, gnl|bosTau2|chr5 (67025150-67025017) | |
| 175-308, gnl|canFam2|chr10 (29773310-29773180) | |
| 175-308, gnl|danRer3|chr19 (6168699-6168574) | |
| 175-308, gnl|dasNov1|scaffold_107531 (4074-4202) | |
| 175-308, gnl|echTel1|scaffold_163892 (2514-2623) | |
| 175-308, gnl|fr1|chrUn (202954132-202954005) | |
| 175-308, gnl|galGal2|chr1 (47771173-47771063) | |
| 175-308, gnl|hg17|chr22 (36679831-36679960) | |
| 175-308, gnl|Hg17|chr22 (36679851-36679984) | |
| 175-308, gnl|loxAfr1|scaffold_114372 (3089-3200) | |
| 175-308, gnl|mm7|chr15 (79228983-79229112) | |
| 175-308, gnl|Mm7|chr15 (79229003-79229136) | |
| 175-308, gnl|monDom2|scaffold_297 (33746-33618) | |
| 175-308, gnl|oryCun1|scaffold_180885 (3238-3368) | |
| 175-308, gnl|panTro1|chr23 (36860888-36861017) | |
| 175-308, gnl|rheMac2|chr10 (81891890-81892019) | |
| 175-308, gnl|rn3|chr7 (117161224-117161353) | |
| 175-308, gnl|tetNig1|chrUn_random (38246502-38246632) | |
| 175-308, gnl|xenTro1|scaffold_246 (501992-502101) | |
| 377-559, gnl|bosTau2|chr5 (67020488-67020297) | |
| 377-559, gnl|Hg17|chr22 (36688129-36688308) | |
| 377-559, gnl|Mm7|chr15 (79234538-79234719) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-588, gnl|bosTau2|chr8 (19206959-19206386) | |
| 175-308, gnl|bosTau2|chr5 (67025150-67025017) | |
| 175-308, gnl|canFam2|chr10 (29773310-29773180) | |
| 175-308, gnl|danRer3|chr19 (6168699-6168574) | |
| 175-308, gnl|dasNov1|scaffold_107531 (4074-4202) | |
| 175-308, gnl|echTel1|scaffold_163892 (2514-2623) | |
| 175-308, gnl|fr1|chrUn (202954132-202954005) | |
| 175-308, gnl|galGal2|chr1 (47771173-47771063) | |
| 175-308, gnl|hg17|chr22 (36679831-36679960) | |
| 175-308, gnl|Hg17|chr22 (36679851-36679984) | |
| 175-308, gnl|loxAfr1|scaffold_114372 (3089-3200) | |
| 175-308, gnl|mm7|chr15 (79228983-79229112) | |
| 175-308, gnl|Mm7|chr15 (79229003-79229136) | |
| 175-308, gnl|monDom2|scaffold_297 (33746-33618) | |
| 175-308, gnl|oryCun1|scaffold_180885 (3238-3368) | |
| 175-308, gnl|panTro1|chr23 (36860888-36861017) | |
| 175-308, gnl|rheMac2|chr10 (81891890-81892019) | |
| 175-308, gnl|rn3|chr7 (117161224-117161353) | |
| 175-308, gnl|tetNig1|chrUn_random (38246502-38246632) | |
| 175-308, gnl|xenTro1|scaffold_246 (501992-502101) | |
| 377-559, gnl|bosTau2|chr5 (67020488-67020297) | |
| 377-559, gnl|Hg17|chr22 (36688129-36688308) | |
| 377-559, gnl|Mm7|chr15 (79234538-79234719) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| hlv (1.11405) | |
| elu (0.770713) | |
| cag (0.604778) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| che (0.408942) | |
| fbs (0.350693) | |
| med (0.348756) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| cje (0.330469) | |
| eli (0.303628) | |
| cst (0.280073) | |
| cly (0.241284) | |
| hea (0.204499) | |
| fty (0.17584) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hlv (1.11405) | |
| elu (0.770713) | |
| cag (0.604778) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| che (0.408942) | |
| fbs (0.350693) | |
| med (0.348756) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| cje (0.330469) | |
| eli (0.303628) | |
| cst (0.280073) | |
| cly (0.241284) | |
| hea (0.204499) | |
| fty (0.17584) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ret (0.128733) | |
| ese (0.126502) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| jej (0.0989218) |