Non-Coding RNA Search

Ss1.1-rdbla0102_c8.5

Sequence:


               
               GGCGGAGGAGGAGAATGCAGAGAAGAGCAAGGCGGCACCTGCTGAAATCGACCAGAGATA
ATGTGAACTCCTACCAGGCCAAGCAATACATGGGTCCAAGGATTTTATGTTTGAGTTTCT
TTAAAAACATTTTTTTTGGCTTTATTTTATTTTTGTCTTTTGGGGGGGGTCTGTTTTGTT
TCTCTTACCTTTTTTTGACATTTCTTTGTTGCACAGGATACACCTGTAGACTGAATAAGT
TCAGTATTTCCGAATCAGACATCGCCTTGGCAAAGACACTAAAGTGTTACGCTTTTACAG
TGGACTGGATCATAGTCATTATAATCACAGGAGACTCTGCCTTCATTATCCTTGCACTTA
TGGAGGAGACACCAGGCAAGTCCCAGGATGAAAAGACCTACGAAATAAATGAAGGAAGCT
ACAAGTGTGTGTGTATATGTATATGTATATATCTCTATATTTACATATATATATTAAATT
GCATGGGACAGAGAACTTTACAATCCGAAAGAATAGACTGTGAAATGAGTTCTTAAAGAA
GAGACTTGTTTATGTATTAAAAAAAAAAAACCACTTCACAGTGAGTCGCTTGGGCTTTTT
GATAAACTGCGGCCTGCTCTCAGGGTGGGGTGACTATTTTGGAATTCCTATTTATTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGAGGAGGAGAATGCAGAGAAGAGCAAGGCGGCACCTGCTGAAATCGACCAGAGATA
ATGTGAACTCCTACCAGGCCAAGCAATACATGGGTCCAAGGATTTTATGTTTGAGTTTCT
TTAAAAACATTTTTTTTGGCTTTATTTTATTTTTGTCTTTTGGGGGGGGTCTGTTTTGTT
TCTCTTACCTTTTTTTGACATTTCTTTGTTGCACAGGATACACCTGTAGACTGAATAAGT
TCAGTATTTCCGAATCAGACATCGCCTTGGCAAAGACACTAAAGTGTTACGCTTTTACAG
TGGACTGGATCATAGTCATTATAATCACAGGAGACTCTGCCTTCATTATCCTTGCACTTA
TGGAGGAGACACCAGGCAAGTCCCAGGATGAAAAGACCTACGAAATAAATGAAGGAAGCT
ACAAGTGTGTGTGTATATGTATATGTATATATCTCTATATTTACATATATATATTAAATT
GCATGGGACAGAGAACTTTACAATCCGAAAGAATAGACTGTGAAATGAGTTCTTAAAGAA
GAGACTTGTTTATGTATTAAAAAAAAAAAACCACTTCACAGTGAGTCGCTTGGGCTTTTT
GATAAACTGCGGCCTGCTCTCAGGGTGGGGTGACTATTTTGGAATTCCTATTTATTTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               371-529, - strand, RNAz p=0.921165

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               371-529, - strand, RNAz p=0.921165

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               439-530, + strand, RNAmicro p=0.960443

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               439-530, + strand, RNAmicro p=0.960443

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr2 (51540436-51539772)
               

               
               1-660, gnl|Hg17|chr2 (199962500-199961816)
               

               
               1-660, gnl|Mm7|chr1 (57046014-57045375)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr2 (51540436-51539772)
               

               
               1-660, gnl|Hg17|chr2 (199962500-199961816)
               

               
               1-660, gnl|Mm7|chr1 (57046014-57045375)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               bla (0.124347)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	1-660, gnl\|bosTau2\|chr2 (51540436-51539772)
	1-660, gnl\|Hg17\|chr2 (199962500-199961816)
	1-660, gnl\|Mm7\|chr1 (57046014-57045375)