Ss1.1-rdbla0102_n13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGCTACAGGTTCCTATGACGGTTTTGCCAGGATATGGACGGAAGATGGTAACCTGGCCA GCACCTTAGGCCAACATAAAGGCCCCATCTTTGCCTTGAAGTGGAACAAGAAGGGGAATT ACATTTTGAGTGCTGGCGTCGACAAAACAACAATAATCTGGGATGCCCACACCGGAGAGG CCAAACAGCAGTTTCCGTTTCATTCTGCCCCCGCTCTCGACGTGGACTGGCAGAACAACA CTACCTTTGCCTCCTGCAGCACGGACATGTGTATTCACGTCTGCAGGCTCGGCTGCGACC GCCCCGTCAAAACCTTCCAAGGACACACAAATGAGGTCAATGCCATCAAGTGGGATCCTT CTGGGATGTTGCTAGCGTCCTGCTCCGATGACATGACATTAAAGATCTGGAGTATGAAGC AGGATACGTGTGTCCATGACCTGCAAGCTCACAGCAAAGAGATCTATACCATAAAGTGGA GTCCCACCGGGCCTGCCACCAGCAACCCAAACTCCAACATCATGCTGGCAAGCGCTTCGT TTGACTCTACGGTTCGGCTGTGGGACGTGGAGCGGGGCGTTTGCATCCACACGCTCACCA AACACCAGGAACCCGTCTATAGTGTAGCTTTTAGCCCTGATGGCAAATATCTGGCCAGCG GCTCCTTTGACAAGTGTGTGCACATCTGGAACACGCAGAGTGGAAGTCTGGTCCACAGCT ACCGCGGCACTGGCGGCATCTTCGAGGTGTGCTGGAACGCCCGAGGGGACAAAGTGGGCG CCAGCGCGTCCGACGGCTCTGTGTGCGTTTTAGATCTGCGGAAGTAAACGTGAAATACCC TAGAAACGAGAAGAGCATTCGCATGGACCAGCAGTGAACCTGTGGGGTTGTAGTAACTCT TCAAACACAATTCCATCAGCTCCAAACTGTTCGAACTTGACGTTAAAGTATACTCTGAAA TCAGCTCATCCCTGGCCACAGGAGTCTATTTTTTCCTAATCTTCATCAAGAAGTTTAAAA CAAAAGCATACACACACCGTCACATCAAAGAGGGAAAGAACGGTTTCCACCTGGAACATT CAGCCCGGGAAGCATGAAGCCACCAGCCAGACAGCGCACCAGCCATCCAGCACAGGCTCT GATGGCTAAGAGGAGAGAAACAAAACAAAACAAACAGCAAGCTGTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGCTACAGGTTCCTATGACGGTTTTGCCAGGATATGGACGGAAGATGGTAACCTGGCCA GCACCTTAGGCCAACATAAAGGCCCCATCTTTGCCTTGAAGTGGAACAAGAAGGGGAATT ACATTTTGAGTGCTGGCGTCGACAAAACAACAATAATCTGGGATGCCCACACCGGAGAGG CCAAACAGCAGTTTCCGTTTCATTCTGCCCCCGCTCTCGACGTGGACTGGCAGAACAACA CTACCTTTGCCTCCTGCAGCACGGACATGTGTATTCACGTCTGCAGGCTCGGCTGCGACC GCCCCGTCAAAACCTTCCAAGGACACACAAATGAGGTCAATGCCATCAAGTGGGATCCTT CTGGGATGTTGCTAGCGTCCTGCTCCGATGACATGACATTAAAGATCTGGAGTATGAAGC AGGATACGTGTGTCCATGACCTGCAAGCTCACAGCAAAGAGATCTATACCATAAAGTGGA GTCCCACCGGGCCTGCCACCAGCAACCCAAACTCCAACATCATGCTGGCAAGCGCTTCGT TTGACTCTACGGTTCGGCTGTGGGACGTGGAGCGGGGCGTTTGCATCCACACGCTCACCA AACACCAGGAACCCGTCTATAGTGTAGCTTTTAGCCCTGATGGCAAATATCTGGCCAGCG GCTCCTTTGACAAGTGTGTGCACATCTGGAACACGCAGAGTGGAAGTCTGGTCCACAGCT ACCGCGGCACTGGCGGCATCTTCGAGGTGTGCTGGAACGCCCGAGGGGACAAAGTGGGCG CCAGCGCGTCCGACGGCTCTGTGTGCGTTTTAGATCTGCGGAAGTAAACGTGAAATACCC TAGAAACGAGAAGAGCATTCGCATGGACCAGCAGTGAACCTGTGGGGTTGTAGTAACTCT TCAAACACAATTCCATCAGCTCCAAACTGTTCGAACTTGACGTTAAAGTATACTCTGAAA TCAGCTCATCCCTGGCCACAGGAGTCTATTTTTTCCTAATCTTCATCAAGAAGTTTAAAA CAAAAGCATACACACACCGTCACATCAAAGAGGGAAAGAACGGTTTCCACCTGGAACATT CAGCCCGGGAAGCATGAAGCCACCAGCCAGACAGCGCACCAGCCATCCAGCACAGGCTCT GATGGCTAAGAGGAGAGAAACAAAACAAAACAAACAGCAAGCTGTGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 207-328, - strand, RNAz p=0.897757 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 207-328, - strand, RNAz p=0.897757 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 207-328, gnl|bosTau2|chrX (43502118-43501997) | |
| 207-328, gnl|canFam2|chrX (6378438-6378601) | |
| 207-328, gnl|danRer3|chr23 (30159056-30158898) | |
| 207-328, gnl|dasNov1|scaffold_181279 (4321-4167) | |
| 207-328, gnl|echTel1|scaffold_282004 (42869-42724) | |
| 207-328, gnl|fr1|chrUn (176605749-176605607) | |
| 207-328, gnl|galGal2|chrUn (140188552-140188698) | |
| 207-328, gnl|Hg17|chrX (9482768-9482889) | |
| 207-328, gnl|hg17|chrY (6992108-6992267) | |
| 207-328, gnl|mm7|chrX (73036982-73037151) | |
| 207-328, gnl|Mm7|chrX (73037017-73037138) | |
| 207-328, gnl|monDom2|scaffold_28 (30482596-30482744) | |
| 207-328, gnl|oryCun1|scaffold_116410 (3161-3329) | |
| 207-328, gnl|panTro1|chrY (6892031-6892190) | |
| 207-328, gnl|rheMac2|chrX (7330634-7330793) | |
| 207-328, gnl|rn3|chrX (63433538-63433703) | |
| 207-328, gnl|tetNig1|chr2 (10241780-10241918) | |
| 207-328, gnl|xenTro1|scaffold_16 (3279393-3279235) | |
| 531-698, gnl|bosTau2|chrX (43495851-43495684) | |
| 531-698, gnl|Hg17|chrX (9489385-9489552) | |
| 531-698, gnl|Mm7|chrX (73042053-73042220) | |
| 801-1170, gnl|bosTau2|chrX (43492998-43492585) | |
| 801-1170, gnl|Hg17|chrX (9493996-9494362) | |
| 801-1170, gnl|Mm7|chrX (73046364-73046735) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 207-328, gnl|bosTau2|chrX (43502118-43501997) | |
| 207-328, gnl|canFam2|chrX (6378438-6378601) | |
| 207-328, gnl|danRer3|chr23 (30159056-30158898) | |
| 207-328, gnl|dasNov1|scaffold_181279 (4321-4167) | |
| 207-328, gnl|echTel1|scaffold_282004 (42869-42724) | |
| 207-328, gnl|fr1|chrUn (176605749-176605607) | |
| 207-328, gnl|galGal2|chrUn (140188552-140188698) | |
| 207-328, gnl|Hg17|chrX (9482768-9482889) | |
| 207-328, gnl|hg17|chrY (6992108-6992267) | |
| 207-328, gnl|mm7|chrX (73036982-73037151) | |
| 207-328, gnl|Mm7|chrX (73037017-73037138) | |
| 207-328, gnl|monDom2|scaffold_28 (30482596-30482744) | |
| 207-328, gnl|oryCun1|scaffold_116410 (3161-3329) | |
| 207-328, gnl|panTro1|chrY (6892031-6892190) | |
| 207-328, gnl|rheMac2|chrX (7330634-7330793) | |
| 207-328, gnl|rn3|chrX (63433538-63433703) | |
| 207-328, gnl|tetNig1|chr2 (10241780-10241918) | |
| 207-328, gnl|xenTro1|scaffold_16 (3279393-3279235) | |
| 531-698, gnl|bosTau2|chrX (43495851-43495684) | |
| 531-698, gnl|Hg17|chrX (9489385-9489552) | |
| 531-698, gnl|Mm7|chrX (73042053-73042220) | |
| 801-1170, gnl|bosTau2|chrX (43492998-43492585) | |
| 801-1170, gnl|Hg17|chrX (9493996-9494362) | |
| 801-1170, gnl|Mm7|chrX (73046364-73046735) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fat (0.147427) | |
| ski (0.146735) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| bla (0.124347) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) |