Non-Coding RNA Search

Ss1.1-rdbla0105_f3.5

Sequence:


               
               GGCGGCTGGGGGTTTCGCGCGGCCATGGCAGACCCTGACCCCCGCTACCCCTGCTCCTCG
ATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCACATCCGAATG
GCCTTTCTAAGAAAAGTCTACAGCATTCTTTCTCTGCAAGTTCTCTTAACTACAATGACA
TCTACATTTTTTTTATACTTTGATTCTGTACGAGCATTTGTACATGAAAGTCCTGCCTTA
ATTTTGGTGTTTGCACTTGGATCTTTGGGATTGATTTTAGCCTTGACTTTAAACAGACAT
AAGCATCCCCTTAACCTCTATCTGCTTTTTGGATTTACACTGTTAGAAGCTCTGACTGTG
GCCTTTGTTGTTACTTTCTATGATGTATATATTGTTCTGCAAGCTTTTATACTGACTACT
GCAGTATTTCTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTT
GGAGCCGGACTATTTGCTGTTTTGTGGATTTTGTGCTTATCAGGGATCTTAAAGGTATTT
TTTTACAGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGGCTGGGGGTTTCGCGCGGCCATGGCAGACCCTGACCCCCGCTACCCCTGCTCCTCG
ATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCACATCCGAATG
GCCTTTCTAAGAAAAGTCTACAGCATTCTTTCTCTGCAAGTTCTCTTAACTACAATGACA
TCTACATTTTTTTTATACTTTGATTCTGTACGAGCATTTGTACATGAAAGTCCTGCCTTA
ATTTTGGTGTTTGCACTTGGATCTTTGGGATTGATTTTAGCCTTGACTTTAAACAGACAT
AAGCATCCCCTTAACCTCTATCTGCTTTTTGGATTTACACTGTTAGAAGCTCTGACTGTG
GCCTTTGTTGTTACTTTCTATGATGTATATATTGTTCTGCAAGCTTTTATACTGACTACT
GCAGTATTTCTTGGTTTGACTGTATATACTCTACAATCTAAGAGAGATTTCAGCAAATTT
GGAGCCGGACTATTTGCTGTTTTGTGGATTTTGTGCTTATCAGGGATCTTAAAGGTATTT
TTTTACAGTGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57092469|ref|XP_531662.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57092469|ref|XP_531662.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-524, + strand, RNAz p=0.798449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-524, + strand, RNAz p=0.798449

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               165-551, gnl|bosTau2|chr29 (16429095-16428717)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               165-551, gnl|bosTau2|chr29 (16429095-16428717)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               pro (0.512033)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               mgm (0.180343)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	pro (0.512033)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	mgm (0.180343)
	bla (0.124347)
	tra (0.123092)