Ss1.1-rdbla0109_i7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGCCAGCAAAGAAAAAGAAGAGGAAGAACTGATGGAAAAGCCCCAGAAAGAAACCAAG AAAGATGAAGATCCTGAAAATAAAATTGAATTTAAAACACGTTTGGGCCGGAATGTTTAC CGTATGCTCTTCAAGAGCAAAGCGTATGAGCGGAACGAGCTCTTCCTTCCGGGCCGCATG GCCTACGTGGTGGATCTGGATGATGAGTACGCCGACACAGACATCCCCACGACTCTTATC CGCAGCAAAGCTGATTGCCCTACCATGGAGGCCCAGACCACACTGACCACAAATGACATT GTCATCAGCAAGCTCACCCAGATCCTTTCCTACCTGAGGCAGGGCACCCGCAACAAGAAG CTCAAAAAGAAAGATAAAGGGAAAATGGAAGAGAAGAAACCCCCTGAGGCTGACATGAAT ATATTTGAAGACATTGGGGATTATGTGCCCTCTACAACCAAGACGCCTCGGGACAAGGAG CGGGAGAGATACCGGGAACGGGAGCGTGATCGCGAAAGAGACAGAGACCGTGACAGGGAG CGGGAACGGGAGCGGGAGCGGGAGCGGGACCGAGAGAGAGAAGAAGAGAAGAAGAGGCAC AGCTACTTTGAGAAGCCGAAAGTGGATGATGAGCCTATGGATGTTGACAAAGGACCCGGA TCTGCCAAGGAATTGATCAAATCGATCAATGAGAAGTTTGCTGGATCTGCCAGCTGGGAA GGCACTGAATCGCTGAAGAAGCCAGAAGACAAGAAGCAGCTGGGAGATTTCTTTGGCATG TCCAACAGCTACGCCGAGTGCTACCCAGCCACGATGGATGACATGGCTGTGGACAGTGAC GAGGAGGTGGATTATAGCAAAATGGACCAGGGTAACAAGAAGGGCCCTTTAGGCCGCTGG GACTTTGATACCCAGGAGGAATACAGCGAATATATGAACAACAAGGAAGCTTTGCCCAAG GCTGCATTCCAGTATGGCATCAAGATGTCTGAAGGGAGGAAAACCAGGCGCTTCAAAGAA ACTAATGACAAAGCAGAGCTTGATCGCCAGTGGAAAAAGATTAGTGCGATCATTGAGAAG AGGAAGAAGATGGAAGCTGATGGGGTTGAAGTGAAAAGACCAAAATACTAATCTCTGGTT CCAACTCCAAGAATAATCTCCCCAAGGATTTTTTCCCCACTGCTTGCTTTCTACAATTCC AAAAAACAGTTGAAAGATTTTTGTGTGTGTGTGTGTGAATGTATATAAAATTTCATTGTG TAATCTTTTGGTTCCATTAAAATTGGTTAACCTGTAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGCCAGCAAAGAAAAAGAAGAGGAAGAACTGATGGAAAAGCCCCAGAAAGAAACCAAG AAAGATGAAGATCCTGAAAATAAAATTGAATTTAAAACACGTTTGGGCCGGAATGTTTAC CGTATGCTCTTCAAGAGCAAAGCGTATGAGCGGAACGAGCTCTTCCTTCCGGGCCGCATG GCCTACGTGGTGGATCTGGATGATGAGTACGCCGACACAGACATCCCCACGACTCTTATC CGCAGCAAAGCTGATTGCCCTACCATGGAGGCCCAGACCACACTGACCACAAATGACATT GTCATCAGCAAGCTCACCCAGATCCTTTCCTACCTGAGGCAGGGCACCCGCAACAAGAAG CTCAAAAAGAAAGATAAAGGGAAAATGGAAGAGAAGAAACCCCCTGAGGCTGACATGAAT ATATTTGAAGACATTGGGGATTATGTGCCCTCTACAACCAAGACGCCTCGGGACAAGGAG CGGGAGAGATACCGGGAACGGGAGCGTGATCGCGAAAGAGACAGAGACCGTGACAGGGAG CGGGAACGGGAGCGGGAGCGGGAGCGGGACCGAGAGAGAGAAGAAGAGAAGAAGAGGCAC AGCTACTTTGAGAAGCCGAAAGTGGATGATGAGCCTATGGATGTTGACAAAGGACCCGGA TCTGCCAAGGAATTGATCAAATCGATCAATGAGAAGTTTGCTGGATCTGCCAGCTGGGAA GGCACTGAATCGCTGAAGAAGCCAGAAGACAAGAAGCAGCTGGGAGATTTCTTTGGCATG TCCAACAGCTACGCCGAGTGCTACCCAGCCACGATGGATGACATGGCTGTGGACAGTGAC GAGGAGGTGGATTATAGCAAAATGGACCAGGGTAACAAGAAGGGCCCTTTAGGCCGCTGG GACTTTGATACCCAGGAGGAATACAGCGAATATATGAACAACAAGGAAGCTTTGCCCAAG GCTGCATTCCAGTATGGCATCAAGATGTCTGAAGGGAGGAAAACCAGGCGCTTCAAAGAA ACTAATGACAAAGCAGAGCTTGATCGCCAGTGGAAAAAGATTAGTGCGATCATTGAGAAG AGGAAGAAGATGGAAGCTGATGGGGTTGAAGTGAAAAGACCAAAATACTAATCTCTGGTT CCAACTCCAAGAATAATCTCCCCAAGGATTTTTTCCCCACTGCTTGCTTTCTACAATTCC AAAAAACAGTTGAAAGATTTTTGTGTGTGTGTGTGTGAATGTATATAAAATTTCATTGTG TAATCTTTTGGTTCCATTAAAATTGGTTAACCTGTAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 961-1078, + strand, RNAz p=0.53045 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 961-1078, + strand, RNAz p=0.53045 |
| Aligned organism(s): 59 entry(ies) | More info |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
| 106-271, gnl|bosTau2|chr7 (30517106-30516941) | |
| 106-271, gnl|canFam2|chr2 (38661969-38661806) | |
| 106-271, gnl|danRer3|chrNA (32373291-32373128) | |
| 106-271, gnl|dasNov1|scaffold_196234 (1399-1562) | |
| 106-271, gnl|echTel1|scaffold_292061 (123129-123290) | |
| 106-271, gnl|fr1|chrUn (138474314-138474477) | |
| 106-271, gnl|galGal2|chr13 (257026-257189) | |
| 106-271, gnl|hg17|chr2 (58599975-58600137) | |
| 106-271, gnl|Hg17|chr5 (140015597-140015762) | |
| 106-271, gnl|loxAfr1|scaffold_51954 (4132-3967) | |
| 106-271, gnl|Mm7|chr18 (37127304-37127469) | |
| 106-271, gnl|mm7|chr19 (36105972-36105823) | |
| 106-271, gnl|monDom2|scaffold_6 (68148609-68148772) | |
| 106-271, gnl|oryCun1|scaffold_208242 (242424-242264) | |
| 106-271, gnl|panTro1|chr12 (60732972-60733134) | |
| 106-271, gnl|rheMac2|chr6 (137057026-137056863) | |
| 106-271, gnl|rn3|chr18 (29479267-29479104) | |
| 106-271, gnl|tetNig1|chrUn_random (103675089-103675252) | |
| 106-271, gnl|xenTro1|scaffold_648 (65898-65735) | |
| 420-633, gnl|bosTau2|chr7 (30515395-30515176) | |
| 420-633, gnl|Hg17|chr5 (140018708-140018933) | |
| 420-633, gnl|Mm7|chr18 (37129628-37129853) | |
| 961-1078, gnl|bosTau2|chr7 (30491981-30491864) | |
| 961-1078, gnl|canFam2|chr2 (38667467-38667361) | |
| 961-1078, gnl|canFam2|chr2 (38667346-38667483) | |
| 961-1078, gnl|danRer3|chrNA (32381882-32381776) | |
| 961-1078, gnl|danRer3|chrNA (32381768-32381898) | |
| 961-1078, gnl|dasNov1|scaffold_196234 (588-694) | |
| 961-1078, gnl|dasNov1|scaffold_82519 (803-939) | |
| 961-1078, gnl|echTel1|scaffold_292061 (118740-118846) | |
| 961-1078, gnl|echTel1|scaffold_292061 (118860-118724) | |
| 961-1078, gnl|fr1|chrUn (138472663-138472759) | |
| 961-1078, gnl|fr1|chrUn (138472763-138472650) | |
| 961-1078, gnl|galGal2|chr13 (252870-252975) | |
| 961-1078, gnl|galGal2|chr13 (252989-252863) | |
| 961-1078, gnl|hg17|chr2 (58599138-58599241) | |
| 961-1078, gnl|hg17|chr5 (140021662-140021792) | |
| 961-1078, gnl|Hg17|chr5 (140021669-140021786) | |
| 961-1078, gnl|loxAfr1|scaffold_101482 (7788-7652) | |
| 961-1078, gnl|loxAfr1|scaffold_51954 (5106-4984) | |
| 961-1078, gnl|mm7|chr18 (37133017-37133146) | |
| 961-1078, gnl|Mm7|chr18 (37133024-37133192) | |
| 961-1078, gnl|mm7|chr19 (36106733-36106630) | |
| 961-1078, gnl|monDom2|scaffold_6 (68141512-68141618) | |
| 961-1078, gnl|monDom2|scaffold_6 (68141625-68141502) | |
| 961-1078, gnl|oryCun1|scaffold_208242 (243208-243102) | |
| 961-1078, gnl|oryCun1|scaffold_212741 (8715-8845) | |
| 961-1078, gnl|panTro1|chr12 (60732129-60732232) | |
| 961-1078, gnl|panTro1|chr4 (146640116-146640246) | |
| 961-1078, gnl|rheMac2|chr6 (137063686-137063580) | |
| 961-1078, gnl|rheMac2|chr6 (137063572-137063702) | |
| 961-1078, gnl|rn3|chr18 (29484744-29484638) | |
| 961-1078, gnl|rn3|chr18 (29484630-29484753) | |
| 961-1078, gnl|tetNig1|chrUn_random (103673499-103673595) | |
| 961-1078, gnl|tetNig1|chrUn_random (103673599-103673486) | |
| 961-1078, gnl|xenTro1|scaffold_648 (74569-74463) | |
| 961-1078, gnl|xenTro1|scaffold_648 (74455-74576) | |
| 1105-1294, gnl|bosTau2|chr7 (30491582-30491397) | |
| 1105-1294, gnl|Hg17|chr5 (140022072-140022246) |
| Aligned organism(s): 59 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 106-271, gnl|bosTau2|chr7 (30517106-30516941) | |
| 106-271, gnl|canFam2|chr2 (38661969-38661806) | |
| 106-271, gnl|danRer3|chrNA (32373291-32373128) | |
| 106-271, gnl|dasNov1|scaffold_196234 (1399-1562) | |
| 106-271, gnl|echTel1|scaffold_292061 (123129-123290) | |
| 106-271, gnl|fr1|chrUn (138474314-138474477) | |
| 106-271, gnl|galGal2|chr13 (257026-257189) | |
| 106-271, gnl|hg17|chr2 (58599975-58600137) | |
| 106-271, gnl|Hg17|chr5 (140015597-140015762) | |
| 106-271, gnl|loxAfr1|scaffold_51954 (4132-3967) | |
| 106-271, gnl|Mm7|chr18 (37127304-37127469) | |
| 106-271, gnl|mm7|chr19 (36105972-36105823) | |
| 106-271, gnl|monDom2|scaffold_6 (68148609-68148772) | |
| 106-271, gnl|oryCun1|scaffold_208242 (242424-242264) | |
| 106-271, gnl|panTro1|chr12 (60732972-60733134) | |
| 106-271, gnl|rheMac2|chr6 (137057026-137056863) | |
| 106-271, gnl|rn3|chr18 (29479267-29479104) | |
| 106-271, gnl|tetNig1|chrUn_random (103675089-103675252) | |
| 106-271, gnl|xenTro1|scaffold_648 (65898-65735) | |
| 420-633, gnl|bosTau2|chr7 (30515395-30515176) | |
| 420-633, gnl|Hg17|chr5 (140018708-140018933) | |
| 420-633, gnl|Mm7|chr18 (37129628-37129853) | |
| 961-1078, gnl|bosTau2|chr7 (30491981-30491864) | |
| 961-1078, gnl|canFam2|chr2 (38667467-38667361) | |
| 961-1078, gnl|canFam2|chr2 (38667346-38667483) | |
| 961-1078, gnl|danRer3|chrNA (32381882-32381776) | |
| 961-1078, gnl|danRer3|chrNA (32381768-32381898) | |
| 961-1078, gnl|dasNov1|scaffold_196234 (588-694) | |
| 961-1078, gnl|dasNov1|scaffold_82519 (803-939) | |
| 961-1078, gnl|echTel1|scaffold_292061 (118740-118846) | |
| 961-1078, gnl|echTel1|scaffold_292061 (118860-118724) | |
| 961-1078, gnl|fr1|chrUn (138472663-138472759) | |
| 961-1078, gnl|fr1|chrUn (138472763-138472650) | |
| 961-1078, gnl|galGal2|chr13 (252870-252975) | |
| 961-1078, gnl|galGal2|chr13 (252989-252863) | |
| 961-1078, gnl|hg17|chr2 (58599138-58599241) | |
| 961-1078, gnl|hg17|chr5 (140021662-140021792) | |
| 961-1078, gnl|Hg17|chr5 (140021669-140021786) | |
| 961-1078, gnl|loxAfr1|scaffold_101482 (7788-7652) | |
| 961-1078, gnl|loxAfr1|scaffold_51954 (5106-4984) | |
| 961-1078, gnl|mm7|chr18 (37133017-37133146) | |
| 961-1078, gnl|Mm7|chr18 (37133024-37133192) | |
| 961-1078, gnl|mm7|chr19 (36106733-36106630) | |
| 961-1078, gnl|monDom2|scaffold_6 (68141512-68141618) | |
| 961-1078, gnl|monDom2|scaffold_6 (68141625-68141502) | |
| 961-1078, gnl|oryCun1|scaffold_208242 (243208-243102) | |
| 961-1078, gnl|oryCun1|scaffold_212741 (8715-8845) | |
| 961-1078, gnl|panTro1|chr12 (60732129-60732232) | |
| 961-1078, gnl|panTro1|chr4 (146640116-146640246) | |
| 961-1078, gnl|rheMac2|chr6 (137063686-137063580) | |
| 961-1078, gnl|rheMac2|chr6 (137063572-137063702) | |
| 961-1078, gnl|rn3|chr18 (29484744-29484638) | |
| 961-1078, gnl|rn3|chr18 (29484630-29484753) | |
| 961-1078, gnl|tetNig1|chrUn_random (103673499-103673595) | |
| 961-1078, gnl|tetNig1|chrUn_random (103673599-103673486) | |
| 961-1078, gnl|xenTro1|scaffold_648 (74569-74463) | |
| 961-1078, gnl|xenTro1|scaffold_648 (74455-74576) | |
| 1105-1294, gnl|bosTau2|chr7 (30491582-30491397) | |
| 1105-1294, gnl|Hg17|chr5 (140022072-140022246) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| cbl (2.98473) | |
| cte (0.58548) | |
| cut (0.509771) | |
| liv (0.438853) | |
| lyg (0.399308) | |
| sug (0.381874) | |
| sto (0.359648) | |
| sin (0.349895) | |
| rec (0.346141) | |
| cje (0.330469) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| lnt (0.284616) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (2.98473) | |
| cte (0.58548) | |
| cut (0.509771) | |
| liv (0.438853) | |
| lyg (0.399308) | |
| sug (0.381874) | |
| sto (0.359648) | |
| sin (0.349895) | |
| rec (0.346141) | |
| cje (0.330469) | |
| tbr (0.308356) | |
| ski (0.29347) | |
| lnt (0.284616) | |
| pgl (0.236967) | |
| pan (0.23596) | |
| ece (0.229305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| aor (0.195274) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| mga (0.160205) | |
| fco (0.157208) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ova (0.129132) | |
| bla (0.124347) | |
| tra (0.123092) | |
| clu (0.119646) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |