Non-Coding RNA Search

Ss1.1-rdbla0109_k19.5

Sequence:


               
               TGGAAGGCCCACAAAGTGCCTGTGAAGAATTCTGGTCCAGACTCAGAAAATTAAACTGGA
AGAGAATTTTAATTCGCCATCGAGAAGACATTCCTTTCGATGGTACAAATGAGGAAATGG
AGAGACAGAGAAAATTTGCAGTTTTTGAAGAAAAAGTGTTCAGTGTTAATGGAGCCAGAG
GAAACCACATGGACTTTGGTCAGCTGTATCAGTTTTTGAGTGCCAAAGGATGCGGGGATG
TTTTCCAGATGTTCTTTGGCGTGGAAGGACAGTGAGCAGAAGAATATTTGAAAGTGTTTT
GTCACTGTTAGTCTTTTGACTTTTTGCCCACTCCTCCTTGAAAGATTAGGTAATTTTACT
TTAGTCCCATTCTAGAATGTTAGGGGGAAAGAAAGAGGAAAAGTATATTTCAGTATAGCC
GAAATGCATCTGTTAAAACTCTGTCATGATTGAATGCAGACCTGAGTTTTACATTATAGT
CTTAAAATTGTTGATAGAAATTTCTTGACATGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAAGGCCCACAAAGTGCCTGTGAAGAATTCTGGTCCAGACTCAGAAAATTAAACTGGA
AGAGAATTTTAATTCGCCATCGAGAAGACATTCCTTTCGATGGTACAAATGAGGAAATGG
AGAGACAGAGAAAATTTGCAGTTTTTGAAGAAAAAGTGTTCAGTGTTAATGGAGCCAGAG
GAAACCACATGGACTTTGGTCAGCTGTATCAGTTTTTGAGTGCCAAAGGATGCGGGGATG
TTTTCCAGATGTTCTTTGGCGTGGAAGGACAGTGAGCAGAAGAATATTTGAAAGTGTTTT
GTCACTGTTAGTCTTTTGACTTTTTGCCCACTCCTCCTTGAAAGATTAGGTAATTTTACT
TTAGTCCCATTCTAGAATGTTAGGGGGAAAGAAAGAGGAAAAGTATATTTCAGTATAGCC
GAAATGCATCTGTTAAAACTCTGTCATGATTGAATGCAGACCTGAGTTTTACATTATAGT
CTTAAAATTGTTGATAGAAATTTCTTGACATGGAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|60551564|gb|AAH91390.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|60551564|gb|AAH91390.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               179-332, + strand, RNAz p=0.99952

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               179-332, + strand, RNAz p=0.99952

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_016940, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016940, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               20-509, gnl|bosTau2|chr1 (6541672-6542143)
               

               
               20-509, gnl|Hg17|chr21 (29300863-29300381)
               

               
               20-509, gnl|Mm7|chr16 (87476595-87476128)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-509, gnl|bosTau2|chr1 (6541672-6542143)
               

               
               20-509, gnl|Hg17|chr21 (29300863-29300381)
               

               
               20-509, gnl|Mm7|chr16 (87476595-87476128)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               bla (0.124347)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.124347)

	20-509, gnl\|bosTau2\|chr1 (6541672-6542143)
	20-509, gnl\|Hg17\|chr21 (29300863-29300381)
	20-509, gnl\|Mm7\|chr16 (87476595-87476128)