Non-Coding RNA Search

Ss1.1-rdbla0110_g4.5.5

Sequence:


               
               TTAGGCTTTTTTTTTTTTTTTAATGTTTTGTTTTTTAAATACCTTTTATAGCATTTTCTT
TACTTCCTAAAGATTCAGGAGATTCTGTGTGACCCTGAATTTTAGAAACATCTGGTCTAC
CTCAGTTAAGTGTTGCCTGTACAGAGAGAGAGCTGAAGTGATCACCACAGCCATAAAACT
GTTTGACTAAGAAGGATTTATGCAATGTTTACAAACCTGGAATCAAGTAAGGATTTTATC
TGAAAGTTAAAATCAGATATTAGAGAAAGTATTTAATTCAGGTATTTTCAAGTTTTAAAA
CGTAACCTGTTTACCTAATAGAAATAGTTTTTTTCTGCTTTGGAAAGTCCATTGAAATGA
CATACCCTAATTTGCAGTGCTTTCTCCATAAAGTTTAGGTGTGAAAGAACTGTAATGTAC
CAGATACGTTTGGAATGAGAGCTTTTGTTGGGTAGGTTCTTTTTCTTTTTTAACTTTTAA
TAGGCTTCCAACAAGAACACCATTGTTGTTCAGAACAAAAATTTTTTTTACGTTATACTT
TCCCTTTTTCCCCCACAGTATTAGGAATTAAAATGAAAAATTGTGCACTCTCTGATTTGA
CTTCTCTAATTACTCTGTCAAGATATTTTTTTCTAATTACCACCACAGCCCTTTTTATAG
GAAAACCAGCATTTGTTCCCTCACCAAACCCCATGCCAAATTCATCATAAAGAAAGCTCA
GCATAAGTAATTCAAATAGTGCTTATAATTGGGGGGGGGGCATTTAATAAATATTCCAAC
CGGTCGTTTTATGCACAAGGCTTCAGTCAGAACATAGAAAAAAAAAAACATTCTGTGAAT
GAAATATTGTATGTTCAGATTTTATAAAAGACATTTTTAAAAGCCCAATTTACAGCCGTA
TATTTTCTTATGATGTAATTTATGAAAAAGATGTCTGTACTAACAGGTGCTGTAACACTA
CTGTTGTTGGATTTTATTGTTTGGTGATAAATGTATACCATATTTCTAAGGGAAACTATG
TACTGTGATGTAAAAGTCTGGGCAAAATGTATATAATCCTTGTATATAATTGTGTATTTG
ATTATAATTACTGATTGTAAAGATTTAATAAAATATGTAAATATTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAGGCTTTTTTTTTTTTTTTAATGTTTTGTTTTTTAAATACCTTTTATAGCATTTTCTT
TACTTCCTAAAGATTCAGGAGATTCTGTGTGACCCTGAATTTTAGAAACATCTGGTCTAC
CTCAGTTAAGTGTTGCCTGTACAGAGAGAGAGCTGAAGTGATCACCACAGCCATAAAACT
GTTTGACTAAGAAGGATTTATGCAATGTTTACAAACCTGGAATCAAGTAAGGATTTTATC
TGAAAGTTAAAATCAGATATTAGAGAAAGTATTTAATTCAGGTATTTTCAAGTTTTAAAA
CGTAACCTGTTTACCTAATAGAAATAGTTTTTTTCTGCTTTGGAAAGTCCATTGAAATGA
CATACCCTAATTTGCAGTGCTTTCTCCATAAAGTTTAGGTGTGAAAGAACTGTAATGTAC
CAGATACGTTTGGAATGAGAGCTTTTGTTGGGTAGGTTCTTTTTCTTTTTTAACTTTTAA
TAGGCTTCCAACAAGAACACCATTGTTGTTCAGAACAAAAATTTTTTTTACGTTATACTT
TCCCTTTTTCCCCCACAGTATTAGGAATTAAAATGAAAAATTGTGCACTCTCTGATTTGA
CTTCTCTAATTACTCTGTCAAGATATTTTTTTCTAATTACCACCACAGCCCTTTTTATAG
GAAAACCAGCATTTGTTCCCTCACCAAACCCCATGCCAAATTCATCATAAAGAAAGCTCA
GCATAAGTAATTCAAATAGTGCTTATAATTGGGGGGGGGGCATTTAATAAATATTCCAAC
CGGTCGTTTTATGCACAAGGCTTCAGTCAGAACATAGAAAAAAAAAAACATTCTGTGAAT
GAAATATTGTATGTTCAGATTTTATAAAAGACATTTTTAAAAGCCCAATTTACAGCCGTA
TATTTTCTTATGATGTAATTTATGAAAAAGATGTCTGTACTAACAGGTGCTGTAACACTA
CTGTTGTTGGATTTTATTGTTTGGTGATAAATGTATACCATATTTCTAAGGGAAACTATG
TACTGTGATGTAAAAGTCTGGGCAAAATGTATATAATCCTTGTATATAATTGTGTATTTG
ATTATAATTACTGATTGTAAAGATTTAATAAAATATGTAAATATTAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               14-154, + strand, RNAz p=0.999795

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-154, + strand, RNAz p=0.999795

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK023095, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK023095, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-580, gnl|bosTau2|chr16 (25336572-25337138)
               

               
               14-580, gnl|Hg17|chr1 (181392426-181391856)
               

               
               14-580, gnl|Mm7|chr1 (151754783-151755348)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-580, gnl|bosTau2|chr16 (25336572-25337138)
               

               
               14-580, gnl|Hg17|chr1 (181392426-181391856)
               

               
               14-580, gnl|Mm7|chr1 (151754783-151755348)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               bla (0.248694)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bla (0.248694)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)
               

               
               eje (0.0988338)

	14-580, gnl\|bosTau2\|chr16 (25336572-25337138)
	14-580, gnl\|Hg17\|chr1 (181392426-181391856)
	14-580, gnl\|Mm7\|chr1 (151754783-151755348)

	bla (0.248694)
	ton (0.1755)
	sin (0.174948)
	fhi (0.169578)
	fco (0.157208)
	tbr (0.154178)
	lun (0.150489)
	fat (0.147427)
	tra (0.123092)
	cbl (0.114797)
	eje (0.0988338)