Ss1.1-rdbla0110_h23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGTGTTGGTTCTTCCCCCTGTTACGGCGTCGGGAGAGTCAGTGGGTCGGCGGGTTTG AACTTCTTTTCCTAGAAGCTGTGCATCACCATAATGAGGCTTGTAATTCTTGATAACTAT GACTTGGCTAGTGAATGGGCAGCCAAATACATCTGTAATCGCATCATTCAGTTCAGACCT GGACAGGACAGATATTTTACGCTGGGATTACCAACAGGGAGTACACCTTTAGGATGTTAT AAAAAACTAATAGAATATCACAAGAATGGAGATCTTTCTTTTAAATATGTGAAGACCTTT AACATGGATGAATATGTAGGACTTCCCAGAAATCATCCTGAAAGCTACCATTCTTACATG TGGAATAACTTTTTTAAGCATATTGATATAGATCCTAATAATGCTCATATCCTCGATGGG AATGCTACAGATTTACAAGCAGAATGTGAATCATTTGAAAAGAAAATAAAGGAAGCTGGA GGAATTGATCTTTTTGTTGGAGGAATTGGTCCAGATGGTCATATTGCTTTCAATGAGCCA GGATCCAGTTTAGTATCAAGGACAAGATTAAAGACTCTGGCAATGGACACTATTTTGGCA AATGCTAAATATTTTGATGGAGATTTATCAAAAGTGCCAACTATGGCTCTAACAGTTGGT GTGGGAACTGTGATGGATGCTAGAGAAGTAATGATCCTTATAACAGGTGCACACAAAGCA TTTGCTCTCTACAAAGCAATAGAAGAAGGAGTCAATCACATGTGGACTGTTTCAGCTTTC CAGCAGCATCCCCGAACTATTTTTGTATGTGATGAAGATGCTACTTTAGAATTAAGAGTT AAAACTGTGAAATACTTTAAAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGTGTTGGTTCTTCCCCCTGTTACGGCGTCGGGAGAGTCAGTGGGTCGGCGGGTTTG AACTTCTTTTCCTAGAAGCTGTGCATCACCATAATGAGGCTTGTAATTCTTGATAACTAT GACTTGGCTAGTGAATGGGCAGCCAAATACATCTGTAATCGCATCATTCAGTTCAGACCT GGACAGGACAGATATTTTACGCTGGGATTACCAACAGGGAGTACACCTTTAGGATGTTAT AAAAAACTAATAGAATATCACAAGAATGGAGATCTTTCTTTTAAATATGTGAAGACCTTT AACATGGATGAATATGTAGGACTTCCCAGAAATCATCCTGAAAGCTACCATTCTTACATG TGGAATAACTTTTTTAAGCATATTGATATAGATCCTAATAATGCTCATATCCTCGATGGG AATGCTACAGATTTACAAGCAGAATGTGAATCATTTGAAAAGAAAATAAAGGAAGCTGGA GGAATTGATCTTTTTGTTGGAGGAATTGGTCCAGATGGTCATATTGCTTTCAATGAGCCA GGATCCAGTTTAGTATCAAGGACAAGATTAAAGACTCTGGCAATGGACACTATTTTGGCA AATGCTAAATATTTTGATGGAGATTTATCAAAAGTGCCAACTATGGCTCTAACAGTTGGT GTGGGAACTGTGATGGATGCTAGAGAAGTAATGATCCTTATAACAGGTGCACACAAAGCA TTTGCTCTCTACAAAGCAATAGAAGAAGGAGTCAATCACATGTGGACTGTTTCAGCTTTC CAGCAGCATCCCCGAACTATTTTTGTATGTGATGAAGATGCTACTTTAGAATTAAGAGTT AAAACTGTGAAATACTTTAAAGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 747-864, + strand, RNAz p=0.829663 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 747-864, + strand, RNAz p=0.829663 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 318-503, gnl|bosTau2|chr7 (35769711-35769896) | |
| 318-503, gnl|Hg17|chr5 (141366077-141365892) | |
| 318-503, gnl|Mm7|chr18 (38709539-38709354) | |
| 688-864, gnl|bosTau2|chr17 (33584819-33584995) | |
| 688-864, gnl|canFam2|chr13 (44149727-44149922) | |
| 688-864, gnl|danRer3|chrNA (105302060-105301872) | |
| 688-864, gnl|dasNov1|scaffold_18908 (7037-6843) | |
| 688-864, gnl|echTel1|scaffold_209604 (8270-8076) | |
| 688-864, gnl|fr1|chrUn (29025990-29026183) | |
| 688-864, gnl|galGal2|chr4 (68071545-68071351) | |
| 688-864, gnl|hg17|chr4 (44550685-44550879) | |
| 688-864, gnl|Hg17|chr4 (44550871-44550695) | |
| 688-864, gnl|loxAfr1|scaffold_50069 (10335-10141) | |
| 688-864, gnl|mm7|chr5 (68934569-68934763) | |
| 688-864, gnl|Mm7|chr5 (68934755-68934579) | |
| 688-864, gnl|monDom2|scaffold_26 (10459933-10460127) | |
| 688-864, gnl|oryCun1|scaffold_181773 (14858-14665) | |
| 688-864, gnl|panTro1|chr3 (47256325-47256519) | |
| 688-864, gnl|rheMac2|chr5 (39848406-39848600) | |
| 688-864, gnl|rn3|chr14 (41067181-41066987) | |
| 688-864, gnl|tetNig1|chr1 (1234973-1234780) | |
| 688-864, gnl|xenTro1|scaffold_84 (521030-521217) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 318-503, gnl|bosTau2|chr7 (35769711-35769896) | |
| 318-503, gnl|Hg17|chr5 (141366077-141365892) | |
| 318-503, gnl|Mm7|chr18 (38709539-38709354) | |
| 688-864, gnl|bosTau2|chr17 (33584819-33584995) | |
| 688-864, gnl|canFam2|chr13 (44149727-44149922) | |
| 688-864, gnl|danRer3|chrNA (105302060-105301872) | |
| 688-864, gnl|dasNov1|scaffold_18908 (7037-6843) | |
| 688-864, gnl|echTel1|scaffold_209604 (8270-8076) | |
| 688-864, gnl|fr1|chrUn (29025990-29026183) | |
| 688-864, gnl|galGal2|chr4 (68071545-68071351) | |
| 688-864, gnl|hg17|chr4 (44550685-44550879) | |
| 688-864, gnl|Hg17|chr4 (44550871-44550695) | |
| 688-864, gnl|loxAfr1|scaffold_50069 (10335-10141) | |
| 688-864, gnl|mm7|chr5 (68934569-68934763) | |
| 688-864, gnl|Mm7|chr5 (68934755-68934579) | |
| 688-864, gnl|monDom2|scaffold_26 (10459933-10460127) | |
| 688-864, gnl|oryCun1|scaffold_181773 (14858-14665) | |
| 688-864, gnl|panTro1|chr3 (47256325-47256519) | |
| 688-864, gnl|rheMac2|chr5 (39848406-39848600) | |
| 688-864, gnl|rn3|chr14 (41067181-41066987) | |
| 688-864, gnl|tetNig1|chr1 (1234973-1234780) | |
| 688-864, gnl|xenTro1|scaffold_84 (521030-521217) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| vin (0.332557) | |
| cty (0.31224) | |
| cte (0.29274) | |
| ebs (0.236602) | |
| hea (0.204499) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| cty (0.31224) | |
| cte (0.29274) | |
| ebs (0.236602) | |
| hea (0.204499) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| kid (0.129735) | |
| bla (0.124347) | |
| tra (0.123092) |