Non-Coding RNA Search

Ss1.1-rdbla0110_j13.5

Sequence:


               
               AGGAACAAAACCATTTCATAGTTACATGATTTAGTATCAAAACAACATGCAGCCAGAACC
CTTTGACATTTTAGGGCTAGTGTGGTACTTGCCTGTAGAAGTGTTTGGTGGCTGGTGTCC
AAAGTCTGTCAAGCATTTGCTGCCGAGTTAGTGGAGTGCTTGCTTTTGTTAAAGTGACTG
TCATTTACCTTGTTACAGATGCGCTCGTTCAGAACCTCCTCTGACAGTACAGAGTGCTCA
AAAACATTGGTGCCCTTTGAAAGCATTATTTACGTTGCTCCAAGGAGTCACTTTTTCTCC
AGGTTTAAAACGAATCACAGCTCTGAAACTTTCATTGAAAATGAGAGACTGAAGCCACAG
GGAAAGTAAAGCAAATAGGGTTTTCAGTATAAATACCAGTGAGGAAAAAACAACCTGGTC
TGTCGAGTTTAGTGTTCATGCACTTGAGAACGTCGCTCCCATTTATTCAGAAAATCCTTC
CGTGGGAGCTGGAGAACCTGAATGTCACAGACTTGTTCTGTTGTGTTGCACTTTATCCTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAACAAAACCATTTCATAGTTACATGATTTAGTATCAAAACAACATGCAGCCAGAACC
CTTTGACATTTTAGGGCTAGTGTGGTACTTGCCTGTAGAAGTGTTTGGTGGCTGGTGTCC
AAAGTCTGTCAAGCATTTGCTGCCGAGTTAGTGGAGTGCTTGCTTTTGTTAAAGTGACTG
TCATTTACCTTGTTACAGATGCGCTCGTTCAGAACCTCCTCTGACAGTACAGAGTGCTCA
AAAACATTGGTGCCCTTTGAAAGCATTATTTACGTTGCTCCAAGGAGTCACTTTTTCTCC
AGGTTTAAAACGAATCACAGCTCTGAAACTTTCATTGAAAATGAGAGACTGAAGCCACAG
GGAAAGTAAAGCAAATAGGGTTTTCAGTATAAATACCAGTGAGGAAAAAACAACCTGGTC
TGTCGAGTTTAGTGTTCATGCACTTGAGAACGTCGCTCCCATTTATTCAGAAAATCCTTC
CGTGGGAGCTGGAGAACCTGAATGTCACAGACTTGTTCTGTTGTGTTGCACTTTATCCTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               161-315, + strand, RNAz p=0.98769

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-315, + strand, RNAz p=0.98769

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-563, gnl|bosTau2|chr21 (42603828-42603262)
               

               
               1-563, gnl|Hg17|chr14 (95821740-95821223)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-563, gnl|bosTau2|chr21 (42603828-42603262)
               

               
               1-563, gnl|Hg17|chr14 (95821740-95821223)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               amn (0.417711)
               

               
               bla (0.248694)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               bla (0.248694)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-563, gnl\|bosTau2\|chr21 (42603828-42603262)
	1-563, gnl\|Hg17\|chr14 (95821740-95821223)

	amn (0.417711)
	bla (0.248694)
	lun (0.150489)
	ski (0.146735)
	liv (0.146284)
	lyg (0.133103)
	thg (0.126791)
	tra (0.123092)
	spc (0.113366)