Non-Coding RNA Search

Ss1.1-rdbla0110_k8.5

Sequence:


               
               ACGTGGCTCTTCCCACATCCCACCAACCTTGCTAGACCCACAGAGGCCCCAAAGTGGCGG
GAACAGGCAGCCCCTCCTCTGCCTGGGCGCTGTCCAGGCCACCTCCTCCATCCCTTCCCT
CAGTGCCCCGCAGCCTGGGTCAGGGCGCCCTCCCCATGGTGACCGAGATCACTGCCACAG
TTTTCTCATGAAAAAGCAGAAACAAAAACTCCTTTTCATTTCTTCTAAGAATTACAACTG
GGAAATAGAAATGGGACCTGAAGAGCTTTCTTGCAGGAGCGAGCGGTTTCATGGTCTTAA
AAAGATGTTATGTGGTTGAAATGAAATCATTCCTAAATTAACCTTTTTTTTTATATATAT
AAAACACTGTACATTATGTTTCTGTGTATTGAATTTTTAAAAGATACTTTACTGGGATAT
TCATGTAATATATAAAGTTTTGGTGAAATGAACTTTAGTTAGAGAAAAAGCTGACATCGG
CTTTCATCTGCGTAAGTTGACACCAATGTGTCATGATATTCTTTATTTTGGGAAATTAGT
GTATTTTATAAAAATTTTAAAGAGTAAAAAGACTACTACAGGATAAGATCATTTTTTACC
TGTCTTTTCTCCATATTTTAAGCTATGTGATTGAAGTACCTCTGTCAATAGTTTCCTGGT
ATGAAGTTGGTTAAAATTTCATCTGTTAATAGATCACCTAGATAATATAATGTATGGGTT
TTCTCCTGGATTTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGTGGCTCTTCCCACATCCCACCAACCTTGCTAGACCCACAGAGGCCCCAAAGTGGCGG
GAACAGGCAGCCCCTCCTCTGCCTGGGCGCTGTCCAGGCCACCTCCTCCATCCCTTCCCT
CAGTGCCCCGCAGCCTGGGTCAGGGCGCCCTCCCCATGGTGACCGAGATCACTGCCACAG
TTTTCTCATGAAAAAGCAGAAACAAAAACTCCTTTTCATTTCTTCTAAGAATTACAACTG
GGAAATAGAAATGGGACCTGAAGAGCTTTCTTGCAGGAGCGAGCGGTTTCATGGTCTTAA
AAAGATGTTATGTGGTTGAAATGAAATCATTCCTAAATTAACCTTTTTTTTTATATATAT
AAAACACTGTACATTATGTTTCTGTGTATTGAATTTTTAAAAGATACTTTACTGGGATAT
TCATGTAATATATAAAGTTTTGGTGAAATGAACTTTAGTTAGAGAAAAAGCTGACATCGG
CTTTCATCTGCGTAAGTTGACACCAATGTGTCATGATATTCTTTATTTTGGGAAATTAGT
GTATTTTATAAAAATTTTAAAGAGTAAAAAGACTACTACAGGATAAGATCATTTTTTACC
TGTCTTTTCTCCATATTTTAAGCTATGTGATTGAAGTACCTCTGTCAATAGTTTCCTGGT
ATGAAGTTGGTTAAAATTTCATCTGTTAATAGATCACCTAGATAATATAATGTATGGGTT
TTCTCCTGGATTTTTTTTTTTTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               398-554, - strand, RNAz p=0.949405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               398-554, - strand, RNAz p=0.949405

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               175-734, gnl|bosTau2|chr8 (285617-286169)
               

               
               175-734, gnl|Hg17|chr4 (170390849-170390287)
               

               
               175-734, gnl|Mm7|chr8 (59804537-59805157)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-734, gnl|bosTau2|chr8 (285617-286169)
               

               
               175-734, gnl|Hg17|chr4 (170390849-170390287)
               

               
               175-734, gnl|Mm7|chr8 (59804537-59805157)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               pro (0.512033)
               

               
               fcc (0.39557)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fcc (0.39557)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               fco (0.157208)
               

               
               ski (0.146735)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	175-734, gnl\|bosTau2\|chr8 (285617-286169)
	175-734, gnl\|Hg17\|chr4 (170390849-170390287)
	175-734, gnl\|Mm7\|chr8 (59804537-59805157)

	pro (0.512033)
	fcc (0.39557)
	nep (0.183925)
	fhi (0.169578)
	fco (0.157208)
	ski (0.146735)
	cov (0.132153)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	eru (0.120048)
	pgl (0.118483)
	spc (0.113366)