Non-Coding RNA Search

Ss1.1-rdbla0112_c14.5

Sequence:


               
               TGATACAAAGTCCAAAGTGTAAACATCCTTTCCTCTCTTGCTGCTACTGTTGCTTTTGGA
AGTTACCACAGGTTGGCACAAACCTATTGTATAGCTGTAGACACCCTCCCCCAACTTTTC
TCTATGGAGGACATGTTACAGCCTTCCATGTCCTCATTTGTCCTTTGAGAAAGTCCACAT
GTGTTCACAATTGTAACCTTTGGATTTACCATCGAAAACGGTGGCAGATGTGATAGAAGT
CTGTGGTCCTGTGGCATTCTACTGTCTGCTGACAGCAGTGCACATGACAGCTGTCTCCAA
ACTCTCAGCGATGCTTAGGGAAAGGCCCTACCCAGGGCCCAGCAGGTCAGCACCCCAGAG
TACTCTGATAGGTTATTAGGAGCCATGTTAGAGCAGAAAATTTGGGTTTGGCATATTCTT
TGGGTAGCAGAGAGCCAGGGAAGCTTTTCTGGGTTGGGGGAGAGGGTTGTTTTGTTTTAG
TAGATTCTGTTTTGTTTTGTTTAACCTCTGTGCAGTTTGCCTGAGTGAATTACTGTCCAT
TTGTAAGGAACCAGGGTCTGGAAGTGACATCACTGTTTCTGACCTAAATATTTTCTCGGG
CAACTCCCACCATGTCTTGTTTCCACTTGTGCCTACTAGCTGATGACAGTATACCGGCAA
TGAGAGCCCTTTTCTTCTACTCCAGAGTTGTTACATAGCTTTGCTGTTGAACCATCAATT
TTTAAACTGTTTAAAGAAAAAGCAGCTATTTTTTCAAAAAAAATTATTTCTCTATTTAGA
GAATTCCCCTTAGACATATTCATATGTAGCAATTTGTCAGCTGACTTAAACATTTCATGA
GAAAGGTCAGCTCTTTTCATTTTTAAAAATCGGCATTATTTACAGTTTCATACTTTTCAT
TATTGCAAAAACCTTTCTAATTAAGATGTTAGGATATTTGGAGTTCCAGTTGTTAATCCT
AAATAAAAGTAATTTAGTTTGTATTTTAAAACTTTTTTAACCTTTTGATTATATCAGGTA
GAATTCTGATGAATTATCATAATTAACTAGGTATATTTCAGAAGGAATTTTTTTTTCTTC
AGAATGATGTAGAACCAGATGCTGTAAGAGATCCTAAGAGCAGTGTGAAATTTACATGAA
GATAAATTTGGATGGCATGGCCAAGTTTGTACTATATCAGGAGGCCCTTTCTAGGAGTTC
TCTTATAGCACAGCAGGTTAGGGTTGTGGCATTGTCACTGTGGCAGCTTGGGTCGCTGCC
TTGGTGCAGGTTTGATCCCTGGCCCAGGAACTTCTGCATGTCATAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGATACAAAGTCCAAAGTGTAAACATCCTTTCCTCTCTTGCTGCTACTGTTGCTTTTGGA
AGTTACCACAGGTTGGCACAAACCTATTGTATAGCTGTAGACACCCTCCCCCAACTTTTC
TCTATGGAGGACATGTTACAGCCTTCCATGTCCTCATTTGTCCTTTGAGAAAGTCCACAT
GTGTTCACAATTGTAACCTTTGGATTTACCATCGAAAACGGTGGCAGATGTGATAGAAGT
CTGTGGTCCTGTGGCATTCTACTGTCTGCTGACAGCAGTGCACATGACAGCTGTCTCCAA
ACTCTCAGCGATGCTTAGGGAAAGGCCCTACCCAGGGCCCAGCAGGTCAGCACCCCAGAG
TACTCTGATAGGTTATTAGGAGCCATGTTAGAGCAGAAAATTTGGGTTTGGCATATTCTT
TGGGTAGCAGAGAGCCAGGGAAGCTTTTCTGGGTTGGGGGAGAGGGTTGTTTTGTTTTAG
TAGATTCTGTTTTGTTTTGTTTAACCTCTGTGCAGTTTGCCTGAGTGAATTACTGTCCAT
TTGTAAGGAACCAGGGTCTGGAAGTGACATCACTGTTTCTGACCTAAATATTTTCTCGGG
CAACTCCCACCATGTCTTGTTTCCACTTGTGCCTACTAGCTGATGACAGTATACCGGCAA
TGAGAGCCCTTTTCTTCTACTCCAGAGTTGTTACATAGCTTTGCTGTTGAACCATCAATT
TTTAAACTGTTTAAAGAAAAAGCAGCTATTTTTTCAAAAAAAATTATTTCTCTATTTAGA
GAATTCCCCTTAGACATATTCATATGTAGCAATTTGTCAGCTGACTTAAACATTTCATGA
GAAAGGTCAGCTCTTTTCATTTTTAAAAATCGGCATTATTTACAGTTTCATACTTTTCAT
TATTGCAAAAACCTTTCTAATTAAGATGTTAGGATATTTGGAGTTCCAGTTGTTAATCCT
AAATAAAAGTAATTTAGTTTGTATTTTAAAACTTTTTTAACCTTTTGATTATATCAGGTA
GAATTCTGATGAATTATCATAATTAACTAGGTATATTTCAGAAGGAATTTTTTTTTCTTC
AGAATGATGTAGAACCAGATGCTGTAAGAGATCCTAAGAGCAGTGTGAAATTTACATGAA
GATAAATTTGGATGGCATGGCCAAGTTTGTACTATATCAGGAGGCCCTTTCTAGGAGTTC
TCTTATAGCACAGCAGGTTAGGGTTGTGGCATTGTCACTGTGGCAGCTTGGGTCGCTGCC
TTGGTGCAGGTTTGATCCCTGGCCCAGGAACTTCTGCATGTCATAGTT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               1-1192, gnl|bosTau2|chr22 (39244213-39243030)
               

               
               1-1192, gnl|Hg17|chr3 (48763722-48761603)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1192, gnl|bosTau2|chr22 (39244213-39243030)
               

               
               1-1192, gnl|Hg17|chr3 (48763722-48761603)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               nms (0.427716)
               

               
               ssp (0.406559)
               

               
               ldo (0.38801)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               ssp (0.406559)
               

               
               ldo (0.38801)
               

               
               cut (0.339847)
               

               
               cki (0.330469)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               ste (0.270416)
               

               
               bla (0.248694)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               jej (0.0989218)

	1-1192, gnl\|bosTau2\|chr22 (39244213-39243030)
	1-1192, gnl\|Hg17\|chr3 (48763722-48761603)

	nms (0.427716)
	ssp (0.406559)
	ldo (0.38801)
	cut (0.339847)
	cki (0.330469)
	tbr (0.308356)
	sme (0.305437)
	ste (0.270416)
	bla (0.248694)
	mas (0.210305)
	tes (0.207814)
	hea (0.204499)
	aor (0.195274)
	sag (0.182715)
	sin (0.174948)
	eye (0.170503)
	bfe (0.149858)
	ski (0.146735)
	lin (0.145603)
	pty (0.142714)
	hlv (0.139256)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	jej (0.0989218)